SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene51044

Length: 494 nt

UniGene Fasta

>uagpf_v2_unigene51044
CGTCGTGACCTTGGCTGTCACTCAGTTTTCAAACACTGTTATACAGATCGTCGTGACCTTGGCTGTCACTCAATTTGAAACCTTCAATATTCTTGAGAATGAAACATTGCGCCAGGGATTAACGTCGTGACTTTGGCTGTCACCACTTTTCCCCAACTCTATATTGATGGAGAGTTTTTTGGTGGATGTGACATTACTATTGAAGCATATAAATCAGGAGAGCTACAGGAGTTATTGGAGAGAGCAATATGCTCTTGATAATATCTGGCATGTTGTTTATGCATACATAATAGTTCTACACATCTTTTGTCGATTTATTAACATCTTTTGAATCTGATGTCTGAATTCGTTGAAGTTGGTTTCAGACGGCATTCTGCTATACAGTAGTTGTTCTCTCTGTTTTGATAAACATGATCCAAAACACATGTAACGATAGTATTAAATAATTGATGTCCATTCCTTATCTAGGATGCTACTTTCAGAATAAAACCTTT

Ace file of the UniGene uagpf_v2_unigene51044

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22724	15/15

Source	Descriptions	Term	Type	Identity
AutoFact	monothiol glutaredoxin-S14 [Arabidopsis thaliana] sp\|Q84Y95.2\|GRS14_ARATH RecName: Full=Monothiol glutaredoxin-S14, chloroplastic; Short=AtGRXcp; Short=AtGrxS14; AltName: Full=CAX-interacting protein 1; Short=CXIP1; Flags: Precursor gb\|AAK60300.1\|AF385708	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	47%
Blast2go	grx5	-	-	78%

Source	InterPros	Term	Type	Identity
Sma3	Glutaredoxin	IPR002109	-	-
Sma3	Monothiol glutaredoxin-related	IPR004480	-	-
Sma3		IPR012335	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NLE0

Fln msg: Overlapping hits, possible frame ERROR between 232 and 145, your sequence is shorter than subject: 86 - 192

Fln protein: VVTLAVTQFSNTVIQIVVTLAVTQFETFNILENETLRQGLTS*LWLSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLERAICS*

Protein Length: 87

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTTCAAACACTGTTATACAGATCGTCGTGACCTTGGCTGTCACTCAATTTGAAACCTTCAATATTCTTGAGAATGAAACATTGCGCCAGGGATTAACGTCGTGACTTTGGCTGTCAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTGGAGAGAGCAATATGCTCTTGATAATATCTGGCATGTTGTTTATGCATACATAATAGTTCTACACATCTTTTGTCGATTTATTAACATCTTTTGAATCTGATGTCTGAATTCGTTGAAGTTGGTTTCAGACGGCATTCTGCTATACAGTAGTTGTTCTCTCTGTTTTGATAAACATGATCCAAAACACATGTAACGATAGTATTAAATAATTGATGTCCATTCCTTATCTAGGATGCTACTTTCAGAATAAAACCTTT

Fln Alignment:

uagpf_mira_rep_c61467___FSNTVIQIVVTLAVTQFETFNILENETLRQGLTS-*LWLSPLFPNSILxxxxxxxxxxxxxxxxxxxxxxxxGELQELLERAICS
A9NLE0________________FSNTVVQVLKSLNVP-FETFNILENETLRQGLKQYSSW--PTFPQLYIxxxxxxxxxxxxxxxxxxxxxxxxGELQELLERAICS

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
49	33	66			0.997476
50			66	33	0.997476
56	66			33	0.997476
58		66		33	0.997476
111			80	20	0.995499
112		60	20	20	0.992578
113		80		20	0.995499
115			80	20	0.995503
116		20	60	20	0.992596
119		40		60	1.0
120		40		60	1.0
121	60			40	1.0
122	60			40	1.0
123	33	33	33		1.0
125		33	33	33	1.0
126	33	33		33	1.0
127	40		60		1.0
129		33	33		1.0
132		16		83	0.994512
133		66		33	0.999977
134	40	40		20	1.0
135	66		33		0.999994
137		60	40		1.0
140			66	33	0.999994
143	10	90			0.90298
147	80			20	0.999996
151			10	90	0.90298
152	10			90	0.90298
157	90		10		0.90298
158	90		10		0.90298
161		90	10		0.90298
164		10		90	0.90298
165	90			10	0.90298
166		10		90	0.90298
167	10			90	0.90298
462		83		16	0.994516
464			16	83	0.994516
465		20		80	0.995493
490	66	33			0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain