SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene51027

Length: 964 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene51027

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21438	5/29
SustainPine v2.0	sp_v2.0_unigene78511	23/29

Source	Descriptions	Term	Type	Identity
AutoFact	DNA-directed RNA polymerase subunit n=2 Tax=Papilionoideae RepID=Q2HU21_MEDTR	-	-	87%
FL-Next	sp=DNA-directed RNA polymerase subunit; Vitis vinifera (Grape).	-	-	89%
Blast2go	dna-directed rna polymerase ii kda polypeptide	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	binding	GO:0005488	Molecular Function	92%
Blast2go	DNA-directed RNA polymerase IV complex	GO:0000418	Cellular Component	92%
Blast2go		GO:0080137	Cellular Component	92%
Blast2go	DNA-directed RNA polymerase II, core complex	GO:0005665	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	DNA-directed RNA polymerase M, 15kDa subunit, conserved site	IPR019761	-	-
Sma3	DNA-directed RNA polymerase, M/15kDa subunit	IPR001529	-	-
Sma3	Zinc finger, TFIIS-type	IPR001222	-	-

Full-Lengther Next Prediction

SNPs (tot: 48)

Position	A %	C %	G %	T %	Probability
289	33		66		1.0
290	50			50	1.0
313		16	83		0.994514
314	83		16		0.994514
318		83		16	0.994515
319		83	16		0.994515
327		80	20		0.995493
329	80			20	0.995493
330		80	20		0.995493
331			80	20	0.995493
336	16	16			0.988814
398	85	14			0.993538
400	85			14	0.993538
401		14	85		0.993538
403	85			14	0.993538
406		14	85		0.993538
407		14	85		0.993538
408	85			14	0.993538
409	85			14	0.993541
416			85	14	0.993541
418	14			85	0.993541
419		14		85	0.993541
422		14		85	0.993534
423	14			85	0.993535
431		11		88	0.923776
434		11		88	0.923646
436		88		11	0.923646
437	88		11		0.923646
439		11		88	0.923646
441		88		11	0.923646
442	87			12	0.992554
443	87		12		0.992554
444	87		12		0.992554
449	11		88		0.923646
450		11	88		0.923564
452	12			87	0.992554
663		16		83	1.0
665		83		16	1.0
666	83	16			1.0
667		83	16		1.0
669	83		16		1.0
670	16		83		1.0
671		16		83	1.0
678		17		82	1.0
681		82		17	1.0
685		82		17	1.0
845	14		85		0.993534
846	33		16		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain