SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene50640

Length: 319 nt

UniGene Fasta

>uagpf_v2_unigene50640
CGTCGTGACCTTGGCTGTCACTCAACTTCCAGCACTATCCTAGCCAATGCAGTCCTCTCGCTCGTCGTGATCTTGGCTGTCACATTTCTAACGTGTATCCCATATTCATCAACAACACATCGTACGGGCCTATCCCAAGAAAAATCGGTCTTGGTCTACACGGTGGACGGGCATTCCCTCCGACTTGCAGTACAGCAGCGACTTAATGATGAAGCGGCCACCTGAGCATAATCTTTTCCGGATGGACCAGTCTTTCTGTGCGCGCGTACTTCATCGGAATAATCCCCAGGTCCAGGTTCATAATCAGCTGTAAATGGCA

Ace file of the UniGene uagpf_v2_unigene50640

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3704	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PB1 domain, putative [Oryza sativa Japonica Group] gb\|ABA93295.1\| PB1 domain containing protein, expressed [Oryza sativa Japonica Group] gb\|EAZ29667.1\| hypothetical protein OsJ_13729 [Oryza sativa Japonica Group] dbj\|BAH01706.1\| unnamed protein product [O	-	-	7.0e-26	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Blast2go	octicosapeptide phox bem1p domain-containing protein	-	-	0.0	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	66%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Phox/Bem1p	IPR000270	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Glycoside hydrolase, chitinase active site	IPR001579	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUV0

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 104 - 285

Fln protein: VVTLAVTQLPALS*PMQSSRSS*SWLSHF*RVSHIHQQHIVRAYPKKNRSWSTRWTGIPSDLQYSSDLMMKRPPEHNLFRMDQSFCARVLHRNNPQVQVHNQL*

Protein Length: 105

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTTCCAGCACTATCCTAGCCAATGCAGTCCTCTCGCTCGTCGTGATCTTGGCTGTCACATTTCTAACGTGTATCCCATATTCATCAACAACACATCGTACGGGCCTATCCCAAGAAAAATCGGTCTTGGTCTACACGGTGGACGGGCATTCCCTCCGACTTGCAGTACAGCAGCGACTTAATGATGAAGCGGCCACCTGAGCATAATCTTTTCCGGATGGACCAGTCTTTCTGTGCGCGCGTACTTCATCGGAATAATCCCCAGGTCCAGGTTCATAATCAGCTGTAA___ATGGCA

Fln Alignment:

uagpf_mira_rep_c59066___RVSHIHQQHIVRAYPKKNRSWSTRWTGIPSDLQYSS-------DLMMKRPP---EHNLFRMDQSFCARVLHRNN-PQVQV
A9NUV0________________RRSHPHQQHAVRASAKNNRL--PLWTVVPSDLQYSSQVRYMNINLMMKPPPPPPQQKFLCIDRSFSARVVHRNNAPQVQV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain