SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene50635

Length: 194 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene50635
GTGGTGCTAGTGAAGAAGAAGGATGGAACCCTTCAGATGTGCATTGACTATAGGGCCCTCAATCGGAAGACTCTAAAGAACTGATACCCTATTCCCAGCATTGACAAGCTGATGGATGAGCTTAGAGGAGCCAAGTACTTCTCTAAGATTGATTTGAGTTCAAGGTACCATGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene50635 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene73457	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	OSJNBa0085C10.29 protein n=1 Tax=Oryza sativa RepID=Q5JPW2_ORYSA	-	-	4.0e-16	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%
Blast2go	retrotransposon ty3-gypsy subclass	-	-	3.44207e-20	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular process	GO:0009987	Biological Process	3.44207e-20	82%
Blast2go	macromolecule metabolic process	GO:0043170	Biological Process	3.44207e-20	82%
Blast2go	primary metabolic process	GO:0044238	Biological Process	3.44207e-20	82%
Blast2go	binding	GO:0005488	Molecular Function	3.44207e-20	82%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Peptidase A2A, retrovirus, catalytic	IPR001995	-	-
Sma3	Exostosin-like	IPR004263	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3		IPR013084	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWN2

Fln msg: atg_distance in limit (1-15): atg_distance = 6, W2: There is no M at the beginning,

Fln protein: VVLVKKKDGTLQMCIDYRALNRKTLKN*YPIPSIDKLMDELRGAKYFSKIDLSSRYHE*

Protein Length: 60

Fln nts: GTGGTGCTAGTGAAGAAGAAGGATGGAACCCTTCAGATGTGCATTGACTATAGGGCCCTCAATCGGAAGACTCTAAAGAACTGATACCCTATTCCCAGCATTGACAAGCTGATGGATGAGCTTAGAGGAGCCAAGTACTTCTCTAAGATTGATTTGAGTTCAAGGTACCATGAGTGA___CAGCCAAGGTCACGACG

Fln Alignment:

uagpf_mira_rep_c59048___VVLVKKKDGTLQMCIDYRALNRKTLKN*YPIPSIDKLMDELRGAKYFSKIDLSSRYH
A9NWN2________________IILVRINDGSYILCNNCRVLNEITIKDKFHISIVDELLDELYGTMYFLELDQKSNYY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain