SustainPineDB

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Assembly info
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene50633

Length: 354 nt

UniGene Fasta

>uagpf_v2_unigene50633
CGTCGTGACCTTGGCTGTCACTCATGAAAAAGAAAGGGTTACTGGTCTCAAGGTAGAATTGTTGGGGGAGACATCTGCTGCCTCAACCATTTCTTATTTAGATAATGGCTGTGTCTATGTAGGGTCGAGCTATGGAGATTCACAGCTTATAAAACTTCATCTGCAACCTGATAATAGAGGTCAATATGTGGAAGTTTTGCAAAGATTTGTAAACCTTGGTCCCATAGTGGACTTCTGTGTTGTTGACCTCGAGAGACAAGGTCAGGGTCAAGTAGTAACTTGTTCTGGAGCATTCAAGGATGGTTCTCTTCGTATAGTCCGAAATGGGATTGGAATCAATGAGCAGGCATCTGC

Ace file of the UniGene uagpf_v2_unigene50633

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene59959	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	DNA repair protein xp-E, putative n=1 Tax=Ricinus communis RepID=B9SKT9_RICCO	-	-	84%
FL-Next	sp=DNA damage-binding protein 1; Solanum lycopersicum (Tomato) (Lycopersicon esculentum).	-	-	85%
Blast2go	dna damage-binding protein 1a	-	-	91%

Source	GOs	Term	Type	Identity
Blast2go	negative regulation of photomorphogenesis	GO:0010100	Biological Process	91%
Blast2go	negative regulation of transcription, DNA-dependent	GO:0045892	Biological Process	91%
Blast2go	protein binding	GO:0005515	Molecular Function	91%
Blast2go	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	91%
Blast2go	nucleus	GO:0005634	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Cleavage/polyadenylation specificity factor, A subunit, C-terminal	IPR004871	-	-
Sma3	Ureohydrolase	IPR006035	-	-
Sma3		IPR012335	-	-
Sma3	Thioredoxin domain	IPR013766	-	-
Sma3		IPR017936	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q6QNU4

Fln msg: Distance to subject end: 696 aas, your sequence is shorter than subject: 117 - 1090

Fln protein: VVTLAVTHEKERVTGLKVELLGETSAASTISYLDNGCVYVGSSYGDSQLIKLHLQPDNRGQYVEVLQRFVNLGPIVDFCVVDLERQGQGQVVTCSGAFKDGSLRIVRNGIGINEQAS

Protein Length: 118

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGAAAAAGAAAGGGTTACTGGTCTCAAGGTAGAATTGTTGGGGGAGACATCTGCTGCCTCAACCATTTCTTATTTAGATAATGGCTGTGTCTATGTAGGGTCGAGCTATGGAGATTCACAGCTTATAAAACTTCATCTGCAACCTGATAATAGAGGTCAATATGTGGAAGTTTTGCAAAGATTTGTAAACCTTGGTCCCATAGTGGACTTCTGTGTTGTTGACCTCGAGAGACAAGGTCAGGGTCAAGTAGTAACTTGTTCTGGAGCATTCAAGGATGGTTCTCTTCGTATAGTCCGAAATGGGATTGGAATCAATGAGCAGGCATCTGC

Fln Alignment:

uagpf_mira_rep_c59041___LAVTHEKERVTGLKVELLGETSAASTISYLDNGCVYVGSSYGDSQLIKLHLQPDNRGQYVEVLQRFVNLGPIVDFCVVDLERQGQGQVVTCSGAFKDGSLRIVRNGIGINEQAS
Q6QNU4________________LVITHEKEKVTGLKIELLGETSIASTISYLDNAFVFIGSSYGDSQLVKLNLQPDTKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQAS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain