SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene50590

Length: 241 nt

UniGene Fasta

>uagpf_v2_unigene50590
CGTCGTGACCTTGGCTGTCACTCAAATTTGAGAAGCGCCTTAGTGAAGCACTTTCTGAGCCAGTTGCATCTCTCCTTGATGCTGGTTCACGAGACACTTGGCCATCAATCAGGAAGATCTTTAAACGTGAGACCGACTCAGCAATATTGGATTTTTCATCTTCCATAAGTGGGTTTGAAATTGATGACAAGACTGCTAATAAGATGGTTGAGAACTTGAAAGAGTATGCAAGAAGTGTGGT

Ace file of the UniGene uagpf_v2_unigene50590

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20669	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Protein SEY1, putative n=1 Tax=Ricinus communis RepID=B9SN36_RICCO	-	-	72%
FL-Next	sp=Protein ROOT HAIR DEFECTIVE 3 homolog 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	53%
Blast2go	protein root hair defective 3 homolog 1-like	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	root epidermal cell differentiation	GO:0010053	Biological Process	84%
Blast2go	cell tip growth	GO:0009932	Biological Process	84%
Blast2go	actin cytoskeleton organization	GO:0030036	Biological Process	84%
Blast2go	ER to Golgi vesicle-mediated transport	GO:0006888	Biological Process	84%
Blast2go	plant-type cell wall biogenesis	GO:0009832	Biological Process	84%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	84%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	84%
Blast2go	plasma membrane	GO:0005886	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	Root hair defective 3 GTP-binding	IPR008803	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FKE9

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 303 aas, your sequence is shorter than subject: 79 - 834

Fln protein: S*PWLSLKFEKRLSEALSEPVASLLDAGSRDTWPSIRKIFKRETDSAILDFSSSISGFEIDDKTANKMVENLKEYARSV

Protein Length: 80

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTTGAGAAGCGCCTTAGTGAAGCACTTTCTGAGCCAGTTGCATCTCTCCTTGATGCTGGTTCACGAGACACTTGGCCATCAATCAGGAAGATCTTTAAACGTGAGACCGACTCAGCAATATTGGATTTTTCATCTTCCATAAGTGGGTTTGAAATTGATGACAAGACTGCTAATAAGATGGTTGAGAACTTGAAAGAGTATGCAAGAAGTGTGGT

Fln Alignment:

uagpf_mira_rep_c58826___LSLKFEKRLSEALSEPVASLLDAGSRDTWPSIRKIFKRETDSAILDFSSSISGFEIDDKTANKMVENLKEYARSV
Q9FKE9________________LTANYEKRLTQALSEPVESLFEAGGKETWPSIRKLLKRETETAVTDFLDVVTGFELDHAKIDAMVQNLKNYSQSL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain