SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene50396

Length: 288 nt

UniGene Fasta

>uagpf_v2_unigene50396
CGTCGTGACCTTGGCTGTCACTCAATTAAACAATGGCAGCCTCTGCAACAGGAGACGCAGTTTTCAGAAGCATTAAGGCATCTAATTCAGTTTCTGATGAACAGCTTTCCATCCTTCACTTCCTCTATGGGAAGAACTTCGAGCGAGCTATGCGAATTTTAGATCAGGGTGGTGTACAACGTATAGTTGGCATACCCAGTGGCCGTGCAGTTTACCAGGTTGCTGGAGAATCAAAAAACAGTGATCAGTACTTATGTTTTGCGGAGCACCACTGTACATGCTATGCTA

Ace file of the UniGene uagpf_v2_unigene50396

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1679	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	zinc finger swim domain-containing protein	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	78%
Blast2go	double-strand break repair via homologous recombination	GO:0000724	Biological Process	78%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	78%
Blast2go	nucleus	GO:0005634	Cellular Component	78%
Blast2go	mitochondrion	GO:0005739	Cellular Component	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	0.0	-
Sma3	Zinc finger, SWIM-type	IPR007527	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LP06

Fln msg: Distance to subject end: 46 aas, your sequence is shorter than subject: 85 - 131

Fln protein: MAASATGDAVFRSIKASNSVSDEQLSILHFLYGKNFERAMRILDQGGVQRIVGIPSGRAVYQVAGESKNSDQYLCFAEHHCTCYA

Protein Length: 86

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTAAACA_-_ATGGCAGCCTCTGCAACAGGAGACGCAGTTTTCAGAAGCATTAAGGCATCTAATTCAGTTTCTGATGAACAGCTTTCCATCCTTCACTTCCTCTATGGGAAGAACTTCGAGCGAGCTATGCGAATTTTAGATCAGGGTGGTGTACAACGTATAGTTGGCATACCCAGTGGCCGTGCAGTTTACCAGGTTGCTGGAGAATCAAAAAACAGTGATCAGTACTTATGTTTTGCGGAGCACCACTGTACATGCTATGCTA

Fln Alignment:

uagpf_mira_rep_c57854___MAASATGDAVFRSIKASNSVSDEQLSILHFLYGKNFERAMRILDQGGVQRIVGIPSGRAVYQVAGESKNSDQYLCFAEHHCTCYA
B8LP06________________MAAAAAGDAVFRSIKASNSVSDEQLSILHFLYGKNFERAMRILDQGGVQRIVGIPSGRAVYQVAGESKNSDQYICFAEHHCTCYA

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
72	75	25			0.996473
75	75			25	0.996473
76	75		25		0.996473
78	25		75		0.996473
79		75		25	0.996474
84	66		33		0.997452
85	66		33		0.997452
141		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain