SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene50374

Length: 320 nt

UniGene Fasta

>uagpf_v2_unigene50374
CGTCGTGACCTTGGCTGTCACTCAGGTTTGTATTGTTACAGAGTGGGATGAGTTCAGGAATTTAGATTATCAGAGAATCTATGACAACATGCAGAAGCCCGCATTCCTTTTTGATGTTGGCGTCAGTCAATGTGGAACAGCTGAGGAAGATTGGTTTCATTGTTTATTCAATTGGCAAACCTCTCGACCCTTGGGTTAAGGATTTGCCTATATCAGCATAGTTTGGTCCATTATGTGCAGATGGAGCAGCAGATGAAGGGTTCTAGGAATATTTTGGTCGGTTCATGCAAATTGAGAGTATTTTCTGTCATTAGGCTCTG

Ace file of the UniGene uagpf_v2_unigene50374

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene62709	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UDP-glucose 6-dehydrogenase, putative n=4 Tax=rosids RepID=B9REG4_RICCO	-	-	4.0e-28	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Blast2go	udp-glucose dehydrogenase	-	-	1.82476e-33	94%

Source	InterPros	Term	Type	Identity
Sma3	UDP-glucose/GDP-mannose dehydrogenase, N-terminal	IPR001732	-	-
Sma3	Dehydrogenase, multihelical	IPR013328	-	-
Sma3	UDP-glucose/GDP-mannose dehydrogenase, dimerisation	IPR014026	-	-
Sma3	UDP-glucose/GDP-mannose dehydrogenase, C-terminal	IPR014027	-	-
Sma3		IPR014028	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Nucleotide sugar dehydrogenase	IPR017476	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ50

Fln msg: Separated hits, possible frame ERROR between 115 and 126, your sequence is shorter than subject: 74 - 480

Fln protein: VVTLAVTQVCIVTEWDEFRNLDYQRIYDNMQKPAFLFxxxxxVNVEQLRKIGFIVYSIGKPLDPWVKDLPISA*

Protein Length: 75

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTTTGTATTGTTACAGAGTGGGATGAGTTCAGGAATTTAGATTATCAGAGAATCTATGACAACATGCAGAAGCCCGCATTCCTTTTTGAxxxxxxxxxxxxAGTCAATGTGGAACAGCTGAGGAAGATTGGTTTCATTGTTTATTCAATTGGCAAACCTCTCGACCCTTGGGTTAAGGATTTGCCTATATCAGCATAGTTTGGTCCATTATGTGCAGATGGAGCAGCAGATGAAGGGTTCTAGGAATATTTTGGTCGGTTCATGCAAATTGAGAGTATTTTCTGTCATTAGGCTCTG

Fln Alignment:

uagpf_mira_rep_c57742___VCIVTEWDEFRNLDYQRIYDNMQKPAFLFDxxxxVNVEQLRKIGFIVYSIGKPLDPWVKDLPISA
B8LQ50________________VCILTEWDEFKTLDYQKIHDNMQKPAFIFDxxxxVDVEKLRKIGFIVYSIGKPLDSWVKDLPAAA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain