SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene50297

Length: 371 nt

UniGene Fasta

>uagpf_v2_unigene50297
CGTCGTGACCTTGGCTGTCACTCATGTGTGATCGTATTCTTTTTCTTGGAAAGGGCATCAAGCAACTTTCATATACGAGAGTGGAACAAATGCTCTCAGATCATAGGCCAGTTAATGCAGTTTTCCTAGCTGAGGTAGAAATATTTTCCCGGAGAAAGCTTCAGAGGGCTTTGACTTTCACAGATGCAGAGTTGGAAGTCGAAGAATTCCCATCTGAAACTGAAATTGGAATTTAGGGCACAAAGTCTGACCTACTATTGTAAGTTCTTATTGATTCTAGCACAGGCCATAATTTTCAAAGTATTTATTGCTTACTAATGTATGTCTGATTGCTGGGTCTTCCATCATAGGAAGATTGTAATATGATGGTA

Ace file of the UniGene uagpf_v2_unigene50297

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene652	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	inositol-1,4,5-trisphosphate 5-Phosphatase [Arabidopsis thaliana]	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	type i inositol- -trisphosphate 5-phosphatase 2-like	-	-	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	62%

Source	InterPros	Term	Type	Identity
Sma3	Protease inhibitor I4, serpin	IPR000215	-	-
Sma3	Inositol polyphosphate-related phosphatase	IPR000300	-	-
Sma3	Phosphoglycerate/bisphosphoglycerate mutase, active site	IPR001345	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	YLP motif	IPR004019	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Phosphoglycerate mutase 1	IPR005952	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Histidine phosphatase superfamily, clade-1	IPR013078	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXZ1

Fln msg: atg_distance in limit (1-15): atg_distance = 16, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 71 - 92

Fln protein: MCDRILFLGKGIKQLSYTRVEQMLSDHRPVNAVFLAEVEIFSRRKLQRALTFTDAELEVEEFPSETEIGI*

Protein Length: 72

Fln nts: CGTCGTGACCTTGGCTGTCACTC_-_ATGTGTGATCGTATTCTTTTTCTTGGAAAGGGCATCAAGCAACTTTCATATACGAGAGTGGAACAAATGCTCTCAGATCATAGGCCAGTTAATGCAGTTTTCCTAGCTGAGGTAGAAATATTTTCCCGGAGAAAGCTTCAGAGGGCTTTGACTTTCACAGATGCAGAGTTGGAAGTCGAAGAATTCCCATCTGAAACTGAAATTGGAATTTAGGGCACAAAGTCTGACCTACTATTGTAAGTTCTTATTGATTCTAGCACAGGCCATAATTTTCAAAGTATTTATTGCTTACTAATGTATGTCTGATTGCTGGGTCTTCCATCATAGGAAGATTGTAATATGATGGTA

Fln Alignment:

uagpf_mira_rep_c57387___CDRILFLGKGIKQLSYTRVEQMLSDHRPVNAVFLAEVEIFSRRKLQRALTFTDAELEVEEFPSETEIGI
A9NXZ1________________CDRILFIGKGIKELSYTRVEQMLSDHRPVNAVFLAEVEIFSRRKLQRALTFTDAELEVEEFPPETEFGI

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
49	33		66		0.997461
50	66	33			0.997464
51	66	33			0.997464
52	66			33	0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain