SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene50284

Length: 278 nt

UniGene Fasta

>uagpf_v2_unigene50284
CGTCGTGACCTTGGCTGTCACGTCGTGACCTTGGCTGTCACTCATTCTTGGAATGCCAACAAACCCTTCTGAAAGCGGCCAAGTAAAAACAGCAACAGTGAAGTTGGCTGTCCATGGCTGTGGACGGTTTGGAGCATACTCATCAATCAGACCACGGAAATGCTCAATTGAATCTTCAACTTGTGACTTCAGTTATGATCCCGACTCAGGGCTTCTAGCGCTGGTTTTGGAGACACCAGTTGAGGGACAACTATGGAACGTGACAGTTGAGCTTTAAG

Ace file of the UniGene uagpf_v2_unigene50284

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene24874	1/3
SustainPine v2.0	sp_v2.0_unigene41064	1/3

Source	Descriptions	Term	Type	Identity
AutoFact	putative galactinol--sucrose galactosyltransferase 6 [Arabidopsis thaliana] gb\|AAL90901.1\| AT5g20250/F5O24_140 [Arabidopsis thaliana] gb\|AAN18198.1\| At5g20250/F5O24_140 [Arabidopsis thaliana] dbj\|BAE99252.1\| seed imbitition protein-like [Arabidopsis thali	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	41%
Blast2go	galactinol--sucrose galactosyltransferase 6	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Galactinol--sucrose galactosyltransferase.	EC:2.4.1.82	-	0.0	75%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Galactose metabolism	00052		0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	negative regulation of abscisic acid mediated signaling pathway	GO:0009788	Biological Process	75%
Blast2go	response to oxidative stress	GO:0006979	Biological Process	75%
Blast2go	raffinose catabolic process	GO:0034484	Biological Process	75%
Blast2go	response to cold	GO:0009409	Biological Process	75%
Blast2go	galactinol-sucrose galactosyltransferase activity	GO:0047274	Molecular Function	75%
Blast2go	protein binding	GO:0005515	Molecular Function	75%
Blast2go	chloroplast	GO:0009507	Cellular Component	75%
Blast2go	response to karrikin	GO:0080167	Biological Process	75%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Cyclic nucleotide-binding domain	IPR000595	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Raffinose synthase	IPR008811	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3		IPR015706	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADX9

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 92 - 193

Fln protein: VVTLAVTS*PWLSLILGMPTNPSESGQVKTATVKLAVHGCGRFGAYSSIRPRKCSIESSTCDFSYDPDSGLLALVLETPVEGQLWNVTVEL*

Protein Length: 93

Fln nts: CGTCGTGACCTTGGCTGTCACGTCGTGACCTTGGCTGTCACTCATTCTTGGAATGCCAACAAACCCTTCTGAAAGCGGCCAAGTAAAAACAGCAACAGTGAAGTTGGCTGTCCATGGCTGTGGACGGTTTGGAGCATACTCATCAATCAGACCACGGAAATGCTCAATTGAATCTTCAACTTGTGACTTCAGTTATGATCCCGACTCAGGGCTTCTAGCGCTGGTTTTGGAGACACCAGTTGAGGGACAACTATGGAACGTGACAGTTGAGCTTTAA___G

Fln Alignment:

uagpf_mira_rep_c57317___TATVKLAVHGCGRFGAYSSIRPRKCSIESSTCDFSYDPDSGLLALVLETPVEGQL-WNVTVEL
D5ADX9________________TVDVRMKVRGCGTFGAYSTHKPKKCSVDSCETEFTYDSTSGLVTFIIPVSKEEMYRWDVKIEI

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
25	33		66		0.997471
27			66	33	0.997476
28	66			33	0.997454
30		66		33	0.997454
31			33	66	0.997457
32	33			66	0.997476
42	33			66	0.997464
43		66	33		0.997464
64	33	33			0.997751

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain