SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene50246

Length: 398 nt

UniGene Fasta

>uagpf_v2_unigene50246
CGTCGTGACCTTGGCTGTCACTCAGGTTGTTATCGTTGGGATATAGGAAATTTGTAACTTGAGTGAAGTGGAAGAGCAACGAATACATTTTGCCGAAAATGGATGAGAAGGTGGTATGCGTGACAGGAGGAAGTGGATTCATAGGATCATGGCTTGTTCGTCAATTACTGGAGCGTGGATACACAGTGCATGCAACTCTCCAAAATCTGAGTGACCCAAAAGAGAGAGACCATCTGGAAGCCTTGGAAGGTGCTAAGGACAGGCTCAAATTATTTCAACTCGATGTTCTGGACTATGATTCCATGGCGGCAGCGATCAATGGTTGCCAGGGAGTTTTCCATCTCGCATCTCCATGTACACTGGAAGAGTTGAAGGATCCTCAGGTTGAGGTGTTGGAT

Ace file of the UniGene uagpf_v2_unigene50246

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10054	3/4

Source	Descriptions	Term	Type	Identity
AutoFact	Cinnamoyl-CoA reductase, putative n=1 Tax=Ricinus communis RepID=B9S058_RICCO	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	64%
Blast2go	cinnamoyl- reductase	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Cinnamoyl-CoA reductase.	EC:1.2.1.44	-	0.0	77%

Source	KEGGs	Term	Type	Identity
Blast2go	Phenylpropanoid biosynthesis	00940		77%
Blast2go	Biosynthesis of phenylpropanoids	01061		77%
Blast2go	Metabolic pathways	01100		77%
Blast2go	Biosynthesis of secondary metabolites	01110		77%
Blast2go	Dihydrokaempferol 4-reductase.	EC:1.1.1.219	-	77%

Source	KEGGs	Term	Identity
Blast2go	Flavonoid biosynthesis	00941	77%
Blast2go	Biosynthesis of phenylpropanoids	01061	77%
Blast2go	Metabolic pathways	01100	77%
Blast2go	Biosynthesis of secondary metabolites	01110	77%

Source	GOs	Term	Type	Identity
Blast2go	lignin biosynthetic process	GO:0009809	Biological Process	77%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	77%
Blast2go	cinnamoyl-CoA reductase activity	GO:0016621	Molecular Function	77%
Blast2go	coenzyme binding	GO:0050662	Molecular Function	77%
Blast2go	dihydrokaempferol 4-reductase activity	GO:0045552	Molecular Function	77%
Blast2go	plasma membrane	GO:0005886	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	3-beta hydroxysteroid dehydrogenase/isomerase	IPR002225	-	-
Sma3	NmrA-like	IPR008030	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PS01

Fln msg: Distance to subject end: 224 aas, your sequence is shorter than subject: 100 - 323

Fln protein: MDEKVVCVTGGSGFIGSWLVRQLLERGYTVHATLQNLSDPKERDHLEALEGAKDRLKLFQLDVLDYDSMAAAINGCQGVFHLASPCTLEELKDPQVEVLD

Protein Length: 101

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTTGTTATCGTTGGGATATAGGAAATTTGTAACTTGAGTGAAGTGGAAGAGCAACGAATACATTTTGCCGAAA_-_ATGGATGAGAAGGTGGTATGCGTGACAGGAGGAAGTGGATTCATAGGATCATGGCTTGTTCGTCAATTACTGGAGCGTGGATACACAGTGCATGCAACTCTCCAAAATCTGAGTGACCCAAAAGAGAGAGACCATCTGGAAGCCTTGGAAGGTGCTAAGGACAGGCTCAAATTATTTCAACTCGATGTTCTGGACTATGATTCCATGGCGGCAGCGATCAATGGTTGCCAGGGAGTTTTCCATCTCGCATCTCCATGTACACTGGAAGAGTTGAAGGATCCTCAGGTTGAGGTGTTGGAT

Fln Alignment:

uagpf_mira_rep_c57115___KVVCVTGGSGFIGSWLVRQLLERGYTVHATLQNLSDPKERDHLEALEGAKDRLKLFQLDVLDYDSMAAAINGCQGVFHLASPCTLEELKDPQVEVLD
C0PS01________________EVVCVTGASGFIGSWVVRLLLERGYSVHATIQDLGNWKETKHLEAMEGAKERLKLFKMDLMDYQSIQDAIDGCSGVFHLAMPNTIDAVEDPQKQLLD

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
59			25	75	0.996476
62	75	25			0.996476
68	75	25			0.996476
69			66	33	0.997452
73	66	33			0.997452
74	66			33	0.997452
77			66	33	0.997452
80	66	33			0.997452
81		66		33	0.997452
82		33	66		0.997452
87		75		25	0.996473
88	75			25	0.996473
214	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain