SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene50219

Length: 202 nt

UniGene Fasta

>uagpf_v2_unigene50219
CGTCGTGACCTTGGCTGTCACTCAAATCTTTCTTTCCACTTTGAGGTAGAGCAGCAGGTGAATGGAGTCTTTCTCAATTTCTTTGGATTCAACGGGACAGCTGGTGTCTGGCGAATAAAATCTCTTGAGGATTCTGGAGGTTGGCTTGAAAGAACAACTGTTGAAGATATGGACATTGCTGTGCGTGCCCATCTGAAGGGGT

Ace file of the UniGene uagpf_v2_unigene50219

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22239	2/3

Source	Descriptions	Term	Type	Identity
AutoFact	putative xyloglucan glycosyltransferase 5 [Arabidopsis thaliana] sp\|Q9SB75.1\|CSLC5_ARATH RecName: Full=Probable xyloglucan glycosyltransferase 5; AltName: Full=Cellulose synthase-like protein C5; Short=AtCslC5 emb\|CAA19764.1\| putative protein [Arabidopsis	-	-	67%
FL-Next	tr=Cellulose synthase-like A2; Pinus taeda (Loblolly pine).	-	-	66%
Blast2go	probable xyloglucan glycosyltransferase 5-like	-	-	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	0.0	88%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 2	IPR001173	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A3QT95

Fln msg: Distance to subject end: 232 aas, your sequence is shorter than subject: 67 - 534

Fln protein: RRDLGCHSNLSFHFEVEQQVNGVFLNFFGFNGTAGVWRIKSLEDSGGWLERTTVEDMDIAVRAHLKG

Protein Length: 68

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATCTTTCTTTCCACTTTGAGGTAGAGCAGCAGGTGAATGGAGTCTTTCTCAATTTCTTTGGATTCAACGGGACAGCTGGTGTCTGGCGAATAAAATCTCTTGAGGATTCTGGAGGTTGGCTTGAAAGAACAACTGTTGAAGATATGGACATTGCTGTGCGTGCCCATCTGAAGGGGT

Fln Alignment:

uagpf_mira_rep_c56927___NLSFHFEVEQQXXXXXXXXXXXXXTAGVWRIKSLEDSGGWLERTTVEDMDIAVRAHLKG
A3QT95________________SLDYHFTVEQEVGSATHAFFGFNGTAGVWRIKALNEAGGWKDRTTVEDMDLAVRASLRG

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
13		33	66		0.997457
15		66		33	0.997457
16		33		66	0.997457
19		66	33		0.997457
24	66			33	0.997476
25	66			33	0.997476
26	66		33		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain