SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene50118

Length: 589 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene50118

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene720	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	Zinc finger, RING-type [Medicago truncatula]	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	e3 ubiquitin-protein ligase rhf2a	-	-	64%

Source	GOs	Term	Type	Identity
Blast2go	microgametogenesis	GO:0055046	Biological Process	64%
Blast2go	regulation of cell cycle	GO:0051726	Biological Process	64%
Blast2go	megagametogenesis	GO:0009561	Biological Process	64%
Blast2go	proteolysis involved in cellular protein catabolic process	GO:0051603	Biological Process	64%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	64%
Blast2go	plasma membrane	GO:0005886	Cellular Component	64%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	0.0	-
Sma3	Zinc finger, RING-type	IPR001841	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
57	33	66			0.997476
60		66	33		0.997476
67	33	66			0.997476
73	25	75			0.996473
76		40	20		1.0
79		40	60		1.0
81		75	25		0.996473
82		40		60	1.0
83	20	40		40	1.0
84	60			40	1.0
86	20		40	20	0.994159
87		40		60	1.0
89	60		40		1.0
91		40		60	1.0
92	40			60	1.0
93		40	60		1.0
96	40			60	1.0
138		83	16		0.994523
145	83	16			0.994523
146	83	16			0.994523
147		83		16	0.994523
148	80			20	0.995493
149	80		20		0.995493
150			20	80	0.995493
152	80			20	0.995493
154			80	20	0.995493
155		20		80	0.995493
162	83			16	0.994514
163	83			16	0.994514
164	83			16	0.994514

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain