SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene50043

Length: 391 nt

UniGene Fasta

>uagpf_v2_unigene50043
CGTCGTGACCTTGGCTGTCACTCAAATTTCTTTACGATCGATAAGAGAAGGCAGGAGGCAACAACTTCATGAGTGCCTGGTTCGAGAATACGTCGTGACTCGTCGTGTCCTTGGCTTCGCTCATTTCCAGTGATTTCTATGAGGGTTGCCGAGCGATCTTGGTTGACAAGGATAAAAATCCAAAGTGGAGGCCTGACAAGTTAGAGCATGTCAGTCAAGATATGGTTGATCATTACTTCTCCCCAATAGGTGCGGGTTTAAAAGATTTAGAACTACCTATATATCAAAGAGAATCAATTACCCATTCTCCTGTTCAATCAAAGCTGTAAGGAAAGTTCAACTAGACTTCTGGAAAGGTCGAGAAGGTGTTTCATTCCAAGTTACAACTTTT

Ace file of the UniGene uagpf_v2_unigene50043

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1851	8/8

Source	Descriptions	Term	Type	Identity
AutoFact	3-hydroxyisobutyryl-CoA hydrolase 1 [Arabidopsis thaliana] sp\|Q9LKJ1.1\|HIBC1_ARATH RecName: Full=3-hydroxyisobutyryl-CoA hydrolase 1; AltName: Full=CoA-thioester hydrolase CHY1 gb\|AAF77193.1\|AF276301_1 CoA-thioester hydrolase CHY1 [Arabidopsis thaliana] d	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	43%
Blast2go	3-hydroxyisobutyryl-coenzyme a expressed	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	3-hydroxyisobutyryl-CoA hydrolase.	EC:3.1.2.4	-	0.0	75%

Source	KEGGs	Term	Identity
Blast2go	Valine, leucine and isoleucine degradation	00280	75%
Blast2go	beta-Alanine metabolism	00410	75%
Blast2go	Propanoate metabolism	00640	75%
Blast2go	Metabolic pathways	01100	75%

Source	GOs	Term	Type	Identity
Blast2go	xanthophyll biosynthetic process	GO:0016123	Biological Process	75%
Blast2go	response to cold	GO:0009409	Biological Process	75%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	75%
Blast2go	fatty acid beta-oxidation	GO:0006635	Biological Process	75%
Blast2go	valine catabolic process	GO:0006574	Biological Process	75%
Blast2go	carotene metabolic process	GO:0016119	Biological Process	75%
Blast2go	3-hydroxyisobutyryl-CoA hydrolase activity	GO:0003860	Molecular Function	75%
Blast2go	lyase activity	GO:0016829	Molecular Function	75%
Blast2go	carotene beta-ring hydroxylase activity	GO:0010291	Molecular Function	75%
Blast2go	intracellular membrane-bounded organelle	GO:0043231	Cellular Component	75%
Blast2go	cytoplasmic part	GO:0044444	Cellular Component	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	Crotonase, core	IPR001753	-	0.0	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVZ0

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 67 aas, putative chimeric sequence, your sequence is shorter than subject: 44 - 388

Fln protein: VVTLAVTQISLRSIREGRRQQLHECLVREYVVTRRVLGFAHFQ*

Protein Length: 45

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTTCTTTACGATCGATAAGAGAAGGCAGGAGGCAACAACTTCATGAGTGCCTGGTTCGAGAATACGTCGTGACTCGTCGTGTCCTTGGCTTCGCTCATTTCCAGTGA___TTTCTATGAGGGTTGCCGAGCGATCTTGGTTGACAAGGATAAAAATCCAAAGTGGAGGCCTGACAAGTTAGAGCATGTCAGTCAAGATATGGTTGATCATTACTTCTCCCCAATAGGTGCGGGTTTAAAAGATTTAGAACTACCTATATATCAAAGAGAATCAATTACCCATTCTCCTGTTCAATCAAAGCTGTAAGGAAAGTTCAACTAGACTTCTGGAAAGGTCGAGAAGGTGTTTCATTCCAAGTTACAACTTTT

Fln Alignment:

uagpf_mira_rep_c55701___QISLRSIREGRRQQLHECLVREYVVTRRVL
A9NVZ0________________KMTLRSVRQARKQTLSECLKKEFRLTINTL

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
218	87	12			0.992555
222	87		12		0.992555
223	87			12	0.992555
227		12		87	0.992555
228	87			12	0.992555
236		14	85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain