SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene49905

Length: 705 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene49905

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6055	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	Phospholipid-transporting atpase, putative n=1 Tax=Ricinus communis RepID=B9RVV5_RICCO	-	-	72%
FL-Next	sp=Phospholipid-transporting ATPase 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	56%
Blast2go	phospholipid-translocating atpase	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phospholipid-translocating ATPase.	EC:3.6.3.1	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	ATP biosynthetic process	GO:0006754	Biological Process	82%
Blast2go	phospholipid transport	GO:0015914	Biological Process	82%
Blast2go	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	GO:0015662	Molecular Function	82%
Blast2go	ATP binding	GO:0005524	Molecular Function	82%
Blast2go	magnesium ion binding	GO:0000287	Molecular Function	82%
Blast2go	phospholipid-translocating ATPase activity	GO:0004012	Molecular Function	82%
Blast2go	integral to membrane	GO:0016021	Cellular Component	82%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	ATPase, P-type, phospholipid-translocating, flippase	IPR006539	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	HAD superfamily hydrolase-like, type 3	IPR013200	-	-
Sma3	Somatotropin hormone, conserved site	IPR018116	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Full-Lengther Next Prediction

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
255		50		50	1.0
256	40		60		1.0
257	25		50	25	1.0
259			20	80	0.995498
260			80	20	0.995498
261			50	50	1.0
262	50	50			1.0
263	80	20			0.995498
266		25	50	25	1.0
267	50			50	1.0
269			25	75	0.996473
270		50		50	1.0
271		40		20	1.0
272	75		25		0.996473
273		75		25	0.996473
274	75	25			0.996473
277		75		25	0.996473
278	75	25			0.996473
502	80	20			0.995496
503	80		20		0.995496
508			20	80	0.995496
509	20	80			0.995493
510		20		80	0.995493
516	75	25			0.996473
520	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain