SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene49537

Length: 278 nt

UniGene Fasta

>uagpf_v2_unigene49537
CGTCGTGACCTTGGCTGTCACTCAAGTGGATGAAGGAGGGGTGATGTTGCTATCATCTTTGTTGGGTCCTTTCACTTCACACGCAGTTGGGACTGAAGCCGTTGGTATTCTGGTTAGGCTTCCTTTGGATTCAGAAGGAAAAACAAGCCTCACAGAACCTGCAAAGATCTCTCTAATGGTAGACCTTCTGCATGAGGGTACCATGGAAACCAGAATAAATTCAGCAAAGCTTATTGAAACTCTAGTCGACATCGAAGATCTGAAGTCTGAGAATGTTT

Ace file of the UniGene uagpf_v2_unigene49537

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3464	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	E3 ubiquitin ligase PUB14, putative n=1 Tax=Ricinus communis RepID=B9R6X8_RICCO	-	-	61%
FL-Next	sp=U-box domain-containing protein 31; Arabidopsis thaliana (Mouse-ear cress).	-	-	58%
Blast2go	u-box domain-containing protein 30-like	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	protein ubiquitination	GO:0016567	Biological Process	78%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	78%
Blast2go	binding	GO:0005488	Molecular Function	78%
Blast2go	ubiquitin ligase complex	GO:0000151	Cellular Component	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	U box domain	IPR003613	-	0.0	-
Sma3	Armadillo-like helical	IPR011989	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FHN9

Fln msg: Distance to subject end: 179 aas, your sequence is shorter than subject: 92 - 444

Fln protein: VVTLAVTQVDEGGVMLLSSLLGPFTSHAVGTEAVGILVRLPLDSEGKTSLTEPAKISLMVDLLHEGTMETRINSAKLIETLVDIEDLKSENV

Protein Length: 93

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTGGATGAAGGAGGGGTGATGTTGCTATCATCTTTGTTGGGTCCTTTCACTTCACACGCAGTTGGGACTGAAGCCGTTGGTATTCTGGTTAGGCTTCCTTTGGATTCAGAAGGAAAAACAAGCCTCACAGAACCTGCAAAGATCTCTCTAATGGTAGACCTTCTGCATGAGGGTACCATGGAAACCAGAATAAATTCAGCAAAGCTTATTGAAACTCTAGTCGACATCGAAGATCTGAAGTCTGAGAATGTTT

Fln Alignment:

uagpf_mira_rep_c51857___TQVDEGGVMLLSSLLGPFTSHAVGTEAVGILVRLPLDSEGKTSLTEPAKISLMVDLLHEGTMETRINSAKLIETLVDIEDLKSENV
Q9FHN9________________TVVDEGGVFVISSLLSPFTSHAVGSEAIAILVNLELDSDSKAGLMQPARVSLMVDMLNDGSIETKINCARLIGRLVEEKGFRAELV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain