SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene49512

Length: 261 nt

UniGene Fasta

>uagpf_v2_unigene49512
CGTCGTGACCTTGGCTGTCACTCATTTGCGAGTGTGCAAAGGTTCTATGTGCTTTGACACTTATGGTAAAAGAAGGCAGCTTGGGCAGACTTAGCAAAGAGTGGAACTTTATAGGTTCATTAACAGCTTCAGGCCTTCCAGCAGCTATTTATGCTCTGCAGAATAGTTTGTTGCAGCTTTCGTATCGAAATCTGGACTCCCTTACCTTTACAATGCTTAATCAGACGAAGCTATTTTTCACTGCACTTTTCATGTACCTTA

Ace file of the UniGene uagpf_v2_unigene49512

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16787	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleotide-sugar transporter family protein [Arabidopsis thaliana] gb\|AAM62500.1\| unknown [Arabidopsis thaliana] dbj\|BAE99046.1\| hypothetical protein [Arabidopsis thaliana] gb\|ABN04747.1\| At5g65000 [Arabidopsis thaliana] gb\|AED97981.1\| Nucleotide-sugar tr	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	nucleotide-sugar transporter family protein	-	-	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell part	GO:0044464	Cellular Component	0.0	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleotide-sugar transporter	IPR007271	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVH6

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 195 aas, your sequence is shorter than subject: 86 - 330

Fln protein: S*PWLSLICECAKVLCALTLMVKEGSLGRLSKEWNFIGSLTASGLPAAIYALQNSLLQLSYRNLDSLTFTMLNQTKLFFTALFMYL

Protein Length: 87

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTGCGAGTGTGCAAAGGTTCTATGTGCTTTGACACTTATGGTAAAAGAAGGCAGCTTGGGCAGACTTAGCAAAGAGTGGAACTTTATAGGTTCATTAACAGCTTCAGGCCTTCCAGCAGCTATTTATGCTCTGCAGAATAGTTTGTTGCAGCTTTCGTATCGAAATCTGGACTCCCTTACCTTTACAATGCTTAATCAGACGAAGCTATTTTTCACTGCACTTTTCATGTACCTTA

Fln Alignment:

uagpf_mira_rep_c51816___LICECAKVLCALTLMVKEGSLGRLSKEWNFIGSLTASGLPAAIYALQNSLLQLSYRNLDSLTFTMLNQTKLFFTALFMY
A9NVH6________________LICECAKVLCALILIVKEGSLGRLSEEWTFIGSLTASGLPAAIYALQNSLLQLSYRNLDSLTFTMLNQTKLFFTALFMY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain