SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene49487

Length: 250 nt

UniGene Fasta

>uagpf_v2_unigene49487
CGTCGTGACCTTGGCTGTCACTCAAGGAAACTGATCTGTCTGGTTTTGTTTGTACACTTTATGATAATTTATTTCGTGAGGGTGTGAGAGCTGACATTGCACTGCAGAACGCATTGAATTCACATCCAAAGCAGCAATATACCTGTCATCTTCCAAATATGTGATGTTTATTTTAGGATATCCAATTTTGGGAAGTCACAACAAAATAATTAGATGTAAGCATTTGCCTTGTAAAACAGGGTGCAGAAGG

Ace file of the UniGene uagpf_v2_unigene49487

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11631	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Putative calcium-independent phospholipase A2 n=1 Tax=Oryza sativa Japonica Group RepID=Q69VY8_ORYSJ	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	galactolipase phospholipase	-	-	65%

Source	ECs	Term	Type	e value	Identity
Blast2go	Galactolipase.	EC:3.1.1.26	-	0.0	65%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glycerolipid metabolism	00561		0.0	65%

Source	GOs	Term	Type	Identity
Blast2go	jasmonic acid biosynthetic process	GO:0009695	Biological Process	65%
Blast2go	response to fungus	GO:0009620	Biological Process	65%
Blast2go	phospholipase activity	GO:0004620	Molecular Function	65%
Blast2go	galactolipase activity	GO:0047714	Molecular Function	65%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	HEAT	IPR000357	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Patatin/Phospholipase A2-related	IPR002641	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A8P2

Fln msg: Distance to subject end: 21 aas, your sequence is shorter than subject: 29 - 50

Fln protein: MFILGYPILGSHNKIIRCKHLPCKTGCRR

Protein Length: 30

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGGAAACTGATCTGTCTGGTTTTGTTTGTACACTTTATGATAATTTATTTCGTGAGGGTGTGAGAGCTGACATTGCACTGCAGAACGCATTGAATTCACATCCAAAGCAGCAATATACCTGTCATCTTCCAAATATGTG_-_ATGTTTATTTTAGGATATCCAATTTTGGGAAGTCACAACAAAATAATTAGATGTAAGCATTTGCCTTGTAAAACAGGGTGCAGAAGG

Fln Alignment:

uagpf_mira_rep_c51777___MFILGYPILGSHNKIIRCKHLPCKTG
D5A8P2________________MIILGYPILGSRDKIIRCKHFPCKTG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain