SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene49453

Length: 244 nt

UniGene Fasta

>uagpf_v2_unigene49453
CGTCGTGACCTTGGCTGTCACTCACGGATGGATGCGCAGGCGGAGAGTAATTAGAAGAAAGCGGAGTCAGAGATCGGAGCAGATCCGAGGCCAAAGCTCTCCACATGGATGCTACATCTCGCCCCGCTGTTGTTATTGACAATGGCACCGGGTATACAAAGATGGGTTTTGCTGGCAATGTAGAACCATGCTTCATTATCCCTACAGTTGTGGCAGTGAACGAATCATTCGTAAGTCAATCTAG

Ace file of the UniGene uagpf_v2_unigene49453

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9276	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	actin-related protein 3 [Arabidopsis thaliana] sp\|Q9SAF1.1\|ARP3_ARATH RecName: Full=Actin-related protein 3; AltName: Full=Protein DISTORTED TRICHOMES 1 gb\|AAD31071.1\|AC007357_20 Strong similarity to gb\|U29610 Actin-like protein (Arp3) from Acanthamoeba c	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	actin-related protein 3	-	-	91%

Source	GOs	Term	Type	Identity
Blast2go	multidimensional cell growth	GO:0009825	Biological Process	91%
Blast2go	regulation of actin filament polymerization	GO:0030833	Biological Process	91%
Blast2go	trichome morphogenesis	GO:0010090	Biological Process	91%
Blast2go	ATP binding	GO:0005524	Molecular Function	91%
Blast2go	actin binding	GO:0003779	Molecular Function	91%
Blast2go	structural constituent of cytoskeleton	GO:0005200	Molecular Function	91%
Blast2go	Arp2/3 protein complex	GO:0005885	Cellular Component	91%

Source	InterPros	Term	Type	e value	Identity
Sma3	Actin-like	IPR004000	-	0.0	-
Sma3	Actin-related protein 3	IPR015623	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LL38

Fln msg: Distance to subject end: 380 aas, your sequence is shorter than subject: 46 - 427

Fln protein: MDATSRPAVVIDNGTGYTKMGFAGNVEPCFIIPTVVAVNESFVSQS

Protein Length: 47

Fln nts: CGTCGTGACCTTGGCTGTCACTCACGGATGGATGCGCAGGCGGAGAGTAATTAGAAGAAAGCGGAGTCAGAGATCGGAGCAGATCCGAGGCCAAAGCTCTCCAC_-_ATGGATGCTACATCTCGCCCCGCTGTTGTTATTGACAATGGCACCGGGTATACAAAGATGGGTTTTGCTGGCAATGTAGAACCATGCTTCATTATCCCTACAGTTGTGGCAGTGAACGAATCATTCGTAAGTCAATCTAG

Fln Alignment:

uagpf_mira_rep_c51726___MDATSRPAVVIDNGTGYTKMGFAGNVEPCFIIPTVVAVNESFVSQS
B8LL38________________MDATSRPAVVIDNGTGYTKMGFAGNVEPCFIIPTVVAVNESFVSQS

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain