SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene49333

Length: 364 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene49333
AGGGAGAGGACTATGAGGAGACATTTGCTCCAGTTCTGAGGTACACCTCTATTAGAATCATTATTTCTATTGCTTTTGTTATGGATTGGAGATTACATTAGATGGATGTAAACACTGCTTTCCTCAATGGAGTGATTGAGGATGAAGAAGTGTACAGAGAGTCCCCTTAAGGCTTTGAGGTACATGAGAGGGAACCTCATCTAAACTGACTGAAGAAAGCTTTGTATGGGACCTCTAGCATGGTATTCTCGAATTGATGGATATCTTATGAGTCTTGGTTGATCTTGTTATTATATGACTTGTTTCTAATGGGAGTAGGACTCATGTGTCAGAGGGAGCAGCAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene49333 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene75605	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Reverse transcriptase (Fragment) n=1 Tax=Picea abies RepID=Q9FY10_PICAB	-	-	1.0e-24	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Blast2go	reverse transcriptase	-	-	2.43047e-28	69%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKV8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 185 aas, your sequence is shorter than subject: 69 - 363

Fln protein: GEDYEETFAPVLRYTSIRIIISIAFVMDWRLH*MDVNTAFLNGVIEDEEVYRESP*GFEVHEREPHLN*

Protein Length: 70

Fln nts: AGGGAGAGGACTATGAGGAGACATTTGCTCCAGTTCTGAGGTACACCTCTATTAGAATCATTATTTCTATTGCTTTTGTTATGGATTGGAGATTACATTAGATGGATGTAAACACTGCTTTCCTCAATGGAGTGATTGAGGATGAAGAAGTGTACAGAGAGTCCCCTTAAGGCTTTGAGGTACATGAGAGGGAACCTCATCTAAACTGACTGAAGAAAGCTTTGTATGGGACCTCTAGCATGGTATTCTCGAATTGATGGATATCTTATGAGTCTTGGTTGATCTTGTTATTATATGACTTGTTTCTAATGGGAGTAGGACTCATGTGTCAGAGGGAGCAGCAGTGACAGCCAAGGTCACGACG

Fln Alignment:

uagpf_mira_rep_c51567___GEDYEETFAPVLRYTSIRIIISIAFVMDWRLH*MDVNTAFLNGVIEDEEVYRESP*GFEVHEREPHLN*LKKALYG
B8LKV8________________GVDYNETFAPVARLDTIRMVLAIAAQHNWKVYQMDVKSAFLNGYLE-EEVYVQQPPRYEVRGQEDKVYRLKKALNG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain