SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene49284

Length: 333 nt

UniGene Fasta

>uagpf_v2_unigene49284
CGTCGTGACCTTGGCTGTCACTCAGTTTCATAAGGTGAAGTTCATGTGTAGTTTTGGTGGCAAAGTTCTTCCAAGACCAAGTGATGGTGCCCTCAGATATGTGGGGGTGAGACTCGTATTGTCACAGCCCACAGAGGTATTGGCTTTACAGAGCTCATGCAGAAGATGATGCAGACATATGGCCAGGATCTGTTGCTGAAGTATAAATTACCAGATCAGGATCTCGATGCTTTGGTGTCTGTTTCTTGTGATGAGGATCTTGAGAATATGATGGATGAATATGAGAGACACCTGGAAGGTTCGGGTGAAGTTTCTTCAAGGCTGAGAGTATTT

Ace file of the UniGene uagpf_v2_unigene49284

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7902	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	octicosapeptide/Phox/Bem1p domain-containing protein kinase [Arabidopsis thaliana] emb\|CAB51173.1\| putative protein [Arabidopsis thaliana] gb\|AEE78220.1\| octicosapeptide/Phox/Bem1p domain-containing protein kinase [Arabidopsis thaliana]	-	-	6.0e-35	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Blast2go	serine threonine protein	-	-	2.8026e-44	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	phosphorylation	GO:0016310	Biological Process	2.8026e-44	60%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	2.8026e-44	60%

Source	InterPros	Term	Type	Identity
Sma3	Phox/Bem1p	IPR000270	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Vacuolar protein sorting-associated protein	IPR009543	-	-
Sma3		IPR015706	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUV0

Fln msg: Overlapping hits, possible frame ERROR between 106 and 103, Distance to subject end: 155 aas, your sequence is shorter than subject: 111 - 285

Fln protein: VVTLAVTQFHKVKFMCSFGGKVLPRPSDGALRYxxxETRIVTAHRGIGFTELMQKMMQTYGQDLLLKYKLPDQDLDALVSVSCDEDLENMMDEYERHLEGSGEVSSRLRVF

Protein Length: 112

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTCATAAGGTGAAGTTCATGTGTAGTTTTGGTGGCAAAGTTCTTCCAAGACCAAGTGATGGTGCCCTCAGATATxxxxxxxxxGAGACTCGTATTGTCACAGCCCACAGAGGTATTGGCTTTACAGAGCTCATGCAGAAGATGATGCAGACATATGGCCAGGATCTGTTGCTGAAGTATAAATTACCAGATCAGGATCTCGATGCTTTGGTGTCTGTTTCTTGTGATGAGGATCTTGAGAATATGATGGATGAATATGAGAGACACCTGGAAGGTTCGGGTGAAGTTTCTTCAAGGCTGAGAGTATTT

Fln Alignment:

uagpf_mira_rep_c51488___HKVKFMCSFGGKVLPRPSDGALRYVxGETRIVTAHRGIGFTELMQKMMQTYGQD-LLLKYKLPDQDLDALVSVSCDEDLENMMDEYERHLEGSGEVSSRLRVF
A9NUV0________________NRVKFLCRYGGRILPRPGDGKLRYAxGNTRVVAASRSIGFADLIAKMSKVFGSSAVLLKCQLPSEDLDALVSVKSDEDLENMLEEYDR--VGAREGLSKVRAF

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain