SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene49277

Length: 248 nt

UniGene Fasta

>uagpf_v2_unigene49277
CGTCGTGACCTTGGCTGTCACTCATTCTGGAAAAGAAGGTGAATGTGTACATGAACTGAGCTGTAGTGGAAATAAATTCCATTCATGTGTCTTTCATCCAAGCTATCCAAAACTTTTGGTAATTGGATGCTATCAGGTTAGTCAGATTCGGTATTTGACTTCAAAACTATTACTTTTTTAATATGGGCTTTCTCCTTGTAAGAGTTGGTAATGATAGACTTTCTGATTGAGGTGTGTGATTTGTTGAT

Ace file of the UniGene uagpf_v2_unigene49277

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene71532	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9RPC6_RICCO	-	-	1.0e-13	71%
FL-Next	sp=Transcriptional corepressor LEUNIG; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	83%
Blast2go	leunig	-	-	3.25626e-16	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	flower development	GO:0009908	Biological Process	3.25626e-16	89%
Blast2go	mucilage extrusion from seed coat	GO:0080001	Biological Process	3.25626e-16	89%
Blast2go	negative regulation of transcription, DNA-dependent	GO:0045892	Biological Process	3.25626e-16	89%
Blast2go	protein heterodimerization activity	GO:0046982	Molecular Function	3.25626e-16	89%
Blast2go	nucleus	GO:0005634	Cellular Component	3.25626e-16	89%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	Single-stranded DNA-binding protein, SSDP	IPR007591	-	-
Sma3	LisH dimerisation motif, subgroup	IPR013720	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: Q9FUY2

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 33 aas, putative chimeric sequence, your sequence is shorter than subject: 60 - 931

Fln protein: VVTLAVTHSGKEGECVHELSCSGNKFHSCVFHPSYPKLLVIGCYQVSQIRYLTSKLLLF*

Protein Length: 61

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCTGGAAAAGAAGGTGAATGTGTACATGAACTGAGCTGTAGTGGAAATAAATTCCATTCATGTGTCTTTCATCCAAGCTATCCAAAACTTTTGGTAATTGGATGCTATCAGGTTAGTCAGATTCGGTATTTGACTTCAAAACTATTACTTTTTTAA___TATGGGCTTTCTCCTTGTAAGAGTTGGTAATGATAGACTTTCTGATTGAGGTGTGTGATTTGTTGAT

Fln Alignment:

uagpf_mira_rep_c51473___SGKEGECVHELSCSGNKFHSCVFHPSYPKLLVIGCYQ
Q9FUY2________________TGSEGECVHELSCNGNKFQSCVFHPAYPSLLVIGCYQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain