SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene49235

Length: 418 nt

UniGene Fasta

>uagpf_v2_unigene49235
CGTCGTGACCTTGGCTGTCACTCAAGGATGGCCCAACGGGTGATAACACACATGTCTCTACAAGGGTAATGGGTACTTATGGCTATGCTGCTCCTGAATATGTAGCAACAGGTCGTTTGACAGTCAAGAGTGATGTGTACAGCTTTGGGGTTGTCTTATTGGAACTATTGTCAGGTCGCCGTGCTGTAGAGAAGAACAAGCCTGGAATTGAACAGAATTTAGTGGAGTGGGCTAGACCATATCTGAGTGATAAACGCAAATTGTATCTTGTTATGGATACCAAATTGGAGGGTCAGTACTCCATGAAAGGTGCCCATAAAGCAGCAACACTTGCTCTGCAGTGTCTTAACTCCGAAGCAAAACATAGGCCCCTTATGACAGAAGTACTTGAGACATTAGAACAGTTGCAGAATGTCAA

Ace file of the UniGene uagpf_v2_unigene49235

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17360	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Protein kinase [Medicago truncatula]	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	71%
Blast2go	protein kinase	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	kinase activity	GO:0016301	Molecular Function	77%
Blast2go	protein binding	GO:0005515	Molecular Function	77%
Blast2go	cytoplasm	GO:0005737	Cellular Component	77%
Blast2go	plasma membrane	GO:0005886	Cellular Component	77%
Blast2go	nucleus	GO:0005634	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Glycosyl transferase, family 8	IPR002495	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKU3

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 54 aas, your sequence is shorter than subject: 138 - 440

Fln protein: S*PWLSLKDGPTGDNTHVSTRVMGTYGYAAPEYVATGRLTVKSDVYSFGVVLLELLSGRRAVEKNKPGIEQNLVEWARPYLSDKRKLYLVMDTKLEGQYSMKGAHKAATLALQCLNSEAKHRPLMTEVLETLEQLQNV

Protein Length: 139

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGGATGGCCCAACGGGTGATAACACACATGTCTCTACAAGGGTAATGGGTACTTATGGCTATGCTGCTCCTGAATATGTAGCAACAGGTCGTTTGACAGTCAAGAGTGATGTGTACAGCTTTGGGGTTGTCTTATTGGAACTATTGTCAGGTCGCCGTGCTGTAGAGAAGAACAAGCCTGGAATTGAACAGAATTTAGTGGAGTGGGCTAGACCATATCTGAGTGATAAACGCAAATTGTATCTTGTTATGGATACCAAATTGGAGGGTCAGTACTCCATGAAAGGTGCCCATAAAGCAGCAACACTTGCTCTGCAGTGTCTTAACTCCGAAGCAAAACATAGGCCCCTTATGACAGAAGTACTTGAGACATTAGAACAGTTGCAGAATGTCAA

Fln Alignment:

uagpf_mira_rep_c51414___KDGPTGDNTHVSTRVMGTYGYAAPEYVATGRLTVKSDVYSFGVVLLELLSGRRAVEKNKPGIEQNLVEWARPYLSDKRKLYLVMDTKLEGQYSMKGAHKAATLALQCLNSEAKHRPLMTEVLETLEQLQN
B8LKU3________________KDGPQGDETHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRRSVDKTRPNREHNLVDWARPLLNDKRRLLQIIDPRLEGQYSMKGAQKACSLAYHCLNQNPKARPLMGDVVETLEPLQN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain