SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene49202

Length: 320 nt

UniGene Fasta

>uagpf_v2_unigene49202
CGTCGTGACCTTGGCTGTCACTCATATTATAGGAGATTCATTAAAGACTTCAGCAAGCTAGCCTCGCCATTGTTTGGCCTCTTGGCAAAAGATGTGGAGTTTAATTGGATTGACGATTGTCAGAAGGCTCTGAATGAATTAAAGGACAAGTTGGTGTCTGCTCCAATCTTGAGAGGTCCAAACTGGGCCCTACCTTCCCACATCCACACTGATGCCTCGAACAAAGCCATAGGGGCAGCCTTAAGCAAGTTGAACAAAAACTTTCATATGCCATCTACTTTGTCAGCAAAAACTTATCCAAGGCAGAACTGAATTACACT

Ace file of the UniGene uagpf_v2_unigene49202

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene75721	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion.	-	-	0.0	37%
Blast2go	uncharacterized protein loc100852619	-	-	9.79722e-22	67%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	KID repeat	IPR003900	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Protein of unknown function DUF789	IPR008507	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: P92523

Fln msg: your sequence is shorter than subject: 104 - 158

Fln protein: RRDLGCHSYYRRFIKDFSKLASPLFGLLAKDVEFNWIDDCQKALNELKDKLVSAPILRGPNWALPSHIHTDASNKAIGAALSKLNKNFHMPSTLSAKTYPRQN*

Protein Length: 105

Fln nts: CGTCGTGACCTTGGCTGTCACTCATATTATAGGAGATTCATTAAAGACTTCAGCAAGCTAGCCTCGCCATTGTTTGGCCTCTTGGCAAAAGATGTGGAGTTTAATTGGATTGACGATTGTCAGAAGGCTCTGAATGAATTAAAGGACAAGTTGGTGTCTGCTCCAATCTTGAGAGGTCCAAACTGGGCCCTACCTTCCCACATCCACACTGATGCCTCGAACAAAGCCATAGGGGCAGCCTTAAGCAAGTTGAACAAAAACTTTCATATGCCATCTACTTTGTCAGCAAAAACTTATCCAAGGCAGAACTGA___ATTACACT

Fln Alignment:

uagpf_mira_rep_c51368___LGCHSYYRRFIKDFSKLASPLFGLLAKDVEFNWIDDCQKALNELKDKLVSAPILRGPNWALP
P92523________________LGLTGYYRRFVKNYGKIVRPLTELLKKN-SLKWTEMAALAFKALKGAVTTLPVLALPDLKLP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain