SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene49155

Length: 359 nt

UniGene Fasta

>uagpf_v2_unigene49155
CGTCGTGACCTTGGCTGTCACTCAATGACCAAACTATACCTGTGACTTTTGTCGCTAATAGCAAAGTAGTGGAAATTGAACCAGGCAAAACTCTAAACATTAATGCCAATCTTACACGGGATCAAGAGACAAAACTCATTCAGCTGTTGCAAAAGTATCAAGGGCATTTGCATGGGATTATCCCGATATGAAAGGGATTGATCCTCAGCTTTGCACACATCATATTTATATCGAAAAAGATGCAAGACCGGTGCGCCAACCGCAAAGGAGTCTCAATCCCCATTTGAAGGATGTTGTAAAAGATGAACTTCAGAAACTCCTAGATGTTAATTTTAGTTATCCTATTTCGGATAGTAAAT

Ace file of the UniGene uagpf_v2_unigene49155

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene75687	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	55%
Blast2go	hypothetical protein VITISV_003687 [Vitis vinifera]	-	-	1.18393e-21	69%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	KID repeat	IPR003900	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	DNA methylase, N-4 cytosine-specific, conserved site	IPR017985	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5BCK1

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 853 aas, your sequence is shorter than subject: 119 - 1593

Fln protein: VVTLAVTQ*PNYTCDFCR**QSSGN*TRQNSKH*CQSYTGSRDKTHSAVAKVSRAFAWDYPDMKGIDPQLCTHHIYIEKDARPVRQPQRSLNPHLKDVVKDELQKLLDVNFSYPISDSK

Protein Length: 120

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGACCAAACTATACCTGTGACTTTTGTCGCTAATAGCAAAGTAGTGGAAATTGAACCAGGCAAAACTCTAAACATTAATGCCAATCTTACACGGGATCAAGAGACAAAACTCATTCAGCTGTTGCAAAAGTATCAAGGGCATTTGCATGGGATTATCCCGATATGAAAGGGATTGATCCTCAGCTTTGCACACATCATATTTATATCGAAAAAGATGCAAGACCGGTGCGCCAACCGCAAAGGAGTCTCAATCCCCATTTGAAGGATGTTGTAAAAGATGAACTTCAGAAACTCCTAGATGTTAATTTTAGTTATCCTATTTCGGATAGTAAAT

Fln Alignment:

uagpf_mira_rep_c51293___DKTHSAVAKVSRAFAWDYPDMKGIDPQLCTHHIYIEKDARPVRQPQRSLNPHLKDVVKDELQKLLDVNFSYPISDS
A5BCK1________________DSILGILRKCKKAIGWQISDLKGISPLICTHHIYMEKDAKPVRQPQRRLNPHMQEVVRSEVLKLLQAGIIYPISDS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain