SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene49118

Length: 210 nt

UniGene Fasta

>uagpf_v2_unigene49118
CGTCGTGACCTTGGCTGTCACTCAAAGTATGGACAACTGGGTCATGGCGATAATGAAGATCATCTTGTTCCATGTCGTGTCGAGGGCTTAAGGAATGCTCACATAGCTCAGATCTCTGGTGGCTGGCGACATACAATGGCTCTCGATGTAGATGGGCAACTGTATGGTTGGGATGGAATAAGTTTGGCCAGCTTGGTGTTGGAGATAATA

Ace file of the UniGene uagpf_v2_unigene49118

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9368	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	UVB-resistance protein UVR8 [Arabidopsis thaliana]	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	44%
Blast2go	rcc1 and btb domain-containing protein	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	response to UV-B	GO:0010224	Biological Process	81%
Blast2go	guanyl-nucleotide exchange factor activity	GO:0005085	Molecular Function	81%
Blast2go	chromatin binding	GO:0003682	Molecular Function	81%
Blast2go	cytosol	GO:0005829	Cellular Component	81%
Blast2go	nucleus	GO:0005634	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II	IPR009091	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNM4

Fln msg: Distance to subject end: 78 aas, your sequence is shorter than subject: 70 - 286

Fln protein: RRDLGCHSKYGQLGHGDNEDHLVPCRVEGLRNAHIAQISGGWRHTMALDVDGQLYGWDGISLASLVLEII

Protein Length: 71

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGTATGGACAACTGGGTCATGGCGATAATGAAGATCATCTTGTTCCATGTCGTGTCGAGGGCTTAAGGAATGCTCACATAGCTCAGATCTCTGGTGGCTGGCGACATACAATGGCTCTCGATGTAGATGGGCAACTGTATGGTTGGGATGGAATAAGTTTGGCCAGCTTGGTGTTGGAGATAATA

Fln Alignment:

uagpf_mira_rep_c51239___GQLGHGDNEDHLVPCRVEGLRNAHIAQISGGWRHTMALDVDGQLYGW
B8LNM4________________GQLGVGDNIDHSFPQRVKLPAEEEVVQVSCGWRHTVAITGKSNVFSW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain