SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene48956

Length: 255 nt

UniGene Fasta

>uagpf_v2_unigene48956
CGTCGTGACCTTGGCTGTCACTCAATGTTGCAAAGGTGAGGAAACTGATGAAAGACAGGGGCGTCAAAAAGGAACCTGGATGCAGTTGGATTGAATATCGAAAAAAGATCCATTTATTCGTTGTAGGAGACAGGTCCCACCCACAAAGTGAGGAAATATATGCAACAGTAGAAACTTTAATTCGAAAGATCAAGGAAGCTGGGTATGTGCCTGAAATAAACTTTATAGCTTCATGAAGTTGAGGATGAACTGAAA

Ace file of the UniGene uagpf_v2_unigene48956

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene77615	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat protein (Fragment) n=1 Tax=Pinus nigra RepID=B3U1V2_9CONI	-	-	2.0e-21	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Blast2go	pentatricopeptide repeat protein	-	-	1.59192e-30	80%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 75 aas, your sequence is shorter than subject: 78 - 246

Fln protein: S*PWLSLNVAKVRKLMKDRGVKKEPGCSWIEYRKKIHLFVVGDRSHPQSEEIYATVETLIRKIKEAGYVPEINFIAS*

Protein Length: 79

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGTTGCAAAGGTGAGGAAACTGATGAAAGACAGGGGCGTCAAAAAGGAACCTGGATGCAGTTGGATTGAATATCGAAAAAAGATCCATTTATTCGTTGTAGGAGACAGGTCCCACCCACAAAGTGAGGAAATATATGCAACAGTAGAAACTTTAATTCGAAAGATCAAGGAAGCTGGGTATGTGCCTGAAATAAACTTTATAGCTTCATGAAGTTGAGGATGAACTGAAA

Fln Alignment:

uagpf_mira_rep_c51007___NVAKVRKLMKDRGVKKEPGCSWIEYRKKIHLFVVGDRSHPQSEEIYATVETLIRKIKEAGYVPEINFI
D5AAE0________________DVAKVRKIMKDRGVQKQPGCSWIEVKNKVHTFMVEDKSHPQTEEIYSTLEELARQMEAAGYVPDTNFV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain