SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene48913

Length: 282 nt

UniGene Fasta

>uagpf_v2_unigene48913
CGTCGTGACCTTGGCTGTCACTCAAACATAGAACAGACTTTGATGCTAACCTTAACAGGCTGAAGCTGGCAGGCTGGTTCGACGAAATCATAACGATGATCAGCAAGGATGAGTTACCGGACGATTTCCAGTGTAGTGAAGTGTGGATAAGACTGGGCACTCACTACAGGCTACTAGTTGAGCCACTGGACATCGCGAATTATTACAGGTTGGAAAAAACGAGACTCTGGGCCTTATCTCAGAAATGCCAGGCCTCGTCGTTATACAATTCTCCAAAAGTGG

Ace file of the UniGene uagpf_v2_unigene48913

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5903	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	enhanced disease susceptibility 1 protein [Solanum tuberosum]	-	-	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	enhanced disease susceptibility 1	-	-	55%

Source	ECs	Term	Type	e value	Identity
Blast2go	Triacylglycerol lipase.	EC:3.1.1.3	-	0.0	55%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glycerolipid metabolism	00561		0.0	55%
Blast2go	Metabolic pathways	01100		0.0	55%

Source	GOs	Term	Type	e value	Identity
Blast2go	lipid metabolic process	GO:0006629	Biological Process	0.0	55%
Blast2go	triglyceride lipase activity	GO:0004806	Molecular Function	0.0	55%

Source	InterPros	Term	Type	e value	Identity
Sma3	Lipase, class 3	IPR002921	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVM4

Fln msg: Overlapping hits, possible frame ERROR between 218 and 214, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 115 aas, your sequence is shorter than subject: 94 - 650

Fln protein: S*PWLSLKHRTDFDANLNRLKLAGWFDEIITMISKDELPDDFQCSEVWIRLGTHYRLLVEPLDIANYYRLxxxRDSGPYLRNARPRRYTILQKW

Protein Length: 95

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAACATAGAACAGACTTTGATGCTAACCTTAACAGGCTGAAGCTGGCAGGCTGGTTCGACGAAATCATAACGATGATCAGCAAGGATGAGTTACCGGACGATTTCCAGTGTAGTGAAGTGTGGATAAGACTGGGCACTCACTACAGGCTACTAGTTGAGCCACTGGACATCGCGAATTATTACAGGTTGxxxxxxxxxCGAGACTCTGGGCCTTATCTCAGAAATGCCAGGCCTCGTCGTTATACAATTCTCCAAAAGTGG

Fln Alignment:

uagpf_mira_rep_c50944___KHRTDFDANLNRLKLAGWFDEIITMISKDELPDDFQCSEVWIRLGTHYRLLVEPLDIANYYRLExKRDSGPYLRNARPRRYTILQKW
A9NVM4________________QNRSDFDANLNRLKLAGWWDEIIPMVDKDELPEDFQCSEEWITLGTHYRLLVEPLDIANYYRLGxNEDSGPYLKNGRPRRYTTLQKW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain