SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene48774

Length: 329 nt

UniGene Fasta

>uagpf_v2_unigene48774
CGTCGTGACCTTGGCTGTCACTCAAAGTTATGGATTATCTGTATGCCCACTGATATAGAAGAAAAGGTGTTGTTTGATATCAATTTACAGAAAAGAGATCACTTCCAAGTCCCCTTCAAGTCTGTAGAGTATTCTATTTAGTTTTACTGTATACACATATATAATTGTTTTAGGTAGAAGATAATTTCAGGATAGTTGTAGGTATTTCTTCTTTTATGGGGTTTTCGGAATGGCTGTTTGCAGCAGAGTTGAGCAGCATATGTCACCTCTGTCGGTTTATTGGAGAGGTGCAGTGCCATTCCTGCTCTATTACCTGCTGCTGGAGCAGC

Ace file of the UniGene uagpf_v2_unigene48774

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7589	1/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DOF domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZIX8_MALDO	-	-	9.99995e-41	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	f-box family protein	-	-	2.8026e-45	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	2.8026e-45	64%
Blast2go	DNA binding	GO:0003677	Molecular Function	2.8026e-45	64%

Source	InterPros	Term	Type	Identity
Sma3	Thiolase	IPR002155	-	-
Sma3	Hydroxymethylglutaryl-CoA reductase, class I/II	IPR002202	-	-
Sma3	Zinc finger, Dof-type	IPR003851	-	-
Sma3		IPR012335	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PTP6

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 287 and 287, Distance to subject end: 25 aas, your sequence is shorter than subject: 38 - 58

Fln protein: MGFSEWLFAAELSSICHLCRFIGxxAVPFLLYYLLLEQ

Protein Length: 39

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGTTATGGATTATCTGTATGCCCACTGATATAGAAGAAAAGGTGTTGTTTGATATCAATTTACAGAAAAGAGATCACTTCCAAGTCCCCTTCAAGTCTGTAGAGTATTCTATTTAGTTTTACTGTATACACATATATAATTGTTTTAGGTAGAAGATAATTTCAGGATAGTTGTAGGTATTTCTTCTTTT_-_ATGGGGTTTTCGGAATGGCTGTTTGCAGCAGAGTTGAGCAGCATATGTCACCTCTGTCGGTTTATTGGAxxxxxxGCAGTGCCATTCCTGCTCTATTACCTGCTGCTGGAGCAGC

Fln Alignment:

uagpf_mira_rep_c50734___AAELSSICHLCRFIGEGAVPFLLYYLLLEQ
C0PTP6________________AAELSSICHLCRFIGDGAVPFLLYYLLLEQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain