SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene48632

Length: 243 nt

UniGene Fasta

>uagpf_v2_unigene48632
CGTCGTGACCTTGGCTGTCACTCATTGTTGGTTTCTCAGTTCATGATTGAATTGCAGGGGTTAAAAGCCGTGGATGGGGAGGACCCACCTAGGATTTTGCACTTCAATCCGAGGTTGAAGGGAGATTGGAGTGGAAAGCCTGCTATAGAGCAGAATACATGTTACAGGATGCAGTGGGGATCTGCGCAGAGGTGCGAGGGCTCAGAATCAAGTGCCGAGGATGAAACNGGTATGCGTGCACGC

Ace file of the UniGene uagpf_v2_unigene48632

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28356	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	putative beta-1,3-galactosyltransferase 17 [Arabidopsis thaliana] sp\|Q8GXG6.2\|B3GTH_ARATH RecName: Full=Probable beta-1,3-galactosyltransferase 17 gb\|AEE30783.1\| putative beta-1,3-galactosyltransferase 17 [Arabidopsis thaliana]	-	-	70%
FL-Next	sp=Probable beta-1,3-galactosyltransferase 17; Arabidopsis thaliana (Mouse-ear cress).	-	-	77%
Blast2go	probable beta- -galactosyltransferase 19-like	-	-	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell part	GO:0044464	Cellular Component	0.0	86%

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3	Galectin, carbohydrate recognition domain	IPR001079	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Glycosyl transferase, family 31	IPR002659	-	-
Sma3	Ureohydrolase	IPR006035	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3		IPR014045	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8GXG6

Fln msg: Distance to subject end: 383 aas, your sequence is shorter than subject: 81 - 673

Fln protein: RRDLGCHSLLVSQFMIELQGLKAVDGEDPPRILHFNPRLKGDWSGKPAIEQNTCYRMQWGSAQRCEGSESSAEDETGMRAR

Protein Length: 82

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGTTGGTTTCTCAGTTCATGATTGAATTGCAGGGGTTAAAAGCCGTGGATGGGGAGGACCCACCTAGGATTTTGCACTTCAATCCGAGGTTGAAGGGAGATTGGAGTGGAAAGCCTGCTATAGAGCAGAATACATGTTACAGGATGCAGTGGGGATCTGCGCAGAGGTGCGAGGGCTCAGAATCAAGTGCCGAGGATGAAACaGGTATGCGTGCACGC

Fln Alignment:

uagpf_mira_rep_c50534___GCHSLLVSQFMIELQGLKAVDGEDPPRILHFNPRLKGDWSGKPAIEQNTCYRMQWGSAQRCEGSESSAEDE
Q8GXG6________________GDKTAMVSQFMMELQGLKAVDGEDPPRILHFNPRIKGDWSGRPVIEQNTCYRMQWGSGLRCDGRESSDDEE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain