SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene48597

Length: 363 nt

UniGene Fasta

>uagpf_v2_unigene48597
CGTCGTGACCTTGGCTGTCACTCAAACATTTGGAGGGGTCGTGACTTTGGGTGTCATCCAGTGATGGAATGGATGAACCAAGGCAATGGGCTGAAGTTCTTTCATGGGAGCCCCGCGCCATCTTATACCATAACTTTCTGAGTAAGGAGGAGTGTGAATATCTAATTACTCTTGCAAAACCACACATGGCGAAGTCAACTGTTGTGGATAGCGCAACGGGGAAAAGCAAAGATAGCAGAGTTCGTACAAGCTCTGGAACTTTTCTGAACCGAGGACAAGATAAAATTATACGAAATATTGAGAAAAGAATTGCAGATTTCACCTTCATCCCAGCAGAACATGGGGAAGGCTCCAAGTTCTTCA

Ace file of the UniGene uagpf_v2_unigene48597

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4955	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein [Arabidopsis thaliana] gb\|AAF88161.1\|AC026234_12 Contains similarity to a prolyl 4-hydroxylase alpha subunit protein from Gallus gallus gi\|212530 [Arabidopsis thaliana] gb\|ABE02413.1\| At1g20	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	prolyl 4-hydroxylase subunit alpha-2-like	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Procollagen-proline dioxygenase.	EC:1.14.11.2	-	0.0	88%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Arginine and proline metabolism	00330		0.0	88%
Blast2go	Metabolic pathways	01100		0.0	88%

Source	GOs	Term	Type	Identity
Blast2go	peptidyl-proline hydroxylation to 4-hydroxy-L-proline	GO:0018401	Biological Process	88%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	88%
Blast2go	L-ascorbic acid binding	GO:0031418	Molecular Function	88%
Blast2go	iron ion binding	GO:0005506	Molecular Function	88%
Blast2go	procollagen-proline 4-dioxygenase activity	GO:0004656	Molecular Function	88%
Blast2go	mitochondrion	GO:0005739	Cellular Component	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	0.0	-
Sma3	Prolyl 4-hydroxylase, alpha subunit	IPR006620	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVS8

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 121 aas, your sequence is shorter than subject: 120 - 303

Fln protein: S*PWLSLKHLEGS*LWVSSSDGMDEPRQWAEVLSWEPRAILYHNFLSKEECEYLITLAKPHMAKSTVVDSATGKSKDSRVRTSSGTFLNRGQDKIIRNIEKRIADFTFIPAEHGEGSKFF

Protein Length: 121

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAACATTTGGAGGGGTCGTGACTTTGGGTGTCATCCAGTGATGGAATGGATGAACCAAGGCAATGGGCTGAAGTTCTTTCATGGGAGCCCCGCGCCATCTTATACCATAACTTTCTGAGTAAGGAGGAGTGTGAATATCTAATTACTCTTGCAAAACCACACATGGCGAAGTCAACTGTTGTGGATAGCGCAACGGGGAAAAGCAAAGATAGCAGAGTTCGTACAAGCTCTGGAACTTTTCTGAACCGAGGACAAGATAAAATTATACGAAATATTGAGAAAAGAATTGCAGATTTCACCTTCATCCCAGCAGAACATGGGGAAGGCTCCAAGTTCTTCA

Fln Alignment:

uagpf_mira_c50477___KHLEGS*LWVSSSDGMDEPRQWAEVLSWEPRAILYHNFLSKEECEYLITLAKPHMAKSTVVDSATGKSK-----------DSRVRTSSGTFLNRGQDKIIRNIEKRIADFTFIPAEHGEG
A9NVS8________________EHSGGKKLQETYSNGMDEPKQWAEVLSWEPRAILYHNFLNKEECEYLINLAKPHMAKSTVVDSATGKSKDSRFVHRWKSNDSRVRTSSGMFLNRGQDKTIRSIEKRIADFTFIPAEHGEG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain