SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene48442

Length: 223 nt

UniGene Fasta

>uagpf_v2_unigene48442
CGTCGTGACCTTGGCTGTCACTCATTTTCTTCTTTAATTTCTGCTATTTGCTGTTCTGGGCATCGAGATAAACTTGAAAGCAAGAAAGGATTATCCAGCTCTACTTGGATAGCTGCTGGTTTCAGTTCAGGGCATTGTAGATTGCTTGATCTAAAGAGTGGGACCATTATTGCACATTGCGGGCTCATGATGGTTTCATCACCAAGCTGGCTGCATTGGATTG

Ace file of the UniGene uagpf_v2_unigene48442

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28355	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Neurobeachin, putative n=1 Tax=Ricinus communis RepID=B9RZY6_RICCO	-	-	52%
FL-Next	tr=BWF1-like protein; Oryza sativa subsp. japonica (Rice).	-	-	62%
Blast2go	probable inactive serine threonine-protein kinase lvsg-like	-	-	71%

Source	InterPros	Term	Type	Identity
Sma3	BEACH domain	IPR000409	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3		IPR017442	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q5ZDE5

Fln msg: Separated hits, possible frame ERROR between 174 and 180, Distance to subject end: 115 aas, your sequence is shorter than subject: 74 - 1619

Fln protein: RRDLGCHSFSSLISAICCSGHRDKLESKKGLSSSTWIAAGFSSGHCRLLDLKSGTIIxxxRAHDGFITKLAALD

Protein Length: 75

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTCTTCTTTAATTTCTGCTATTTGCTGTTCTGGGCATCGAGATAAACTTGAAAGCAAGAAAGGATTATCCAGCTCTACTTGGATAGCTGCTGGTTTCAGTTCAGGGCATTGTAGATTGCTTGATCTAAAGAGTGGGACCATTATTGCxxxxxxGCGGGCTCATGATGGTTTCATCACCAAGCTGGCTGCATTGGATTG

Fln Alignment:

uagpf_mira_rep_c50229___SFSSLISAICCSGHRDKLESKKGLSSSTWIAAGFSSGHCRLLDLKSGTIIAxxRAHDGFITKLAA
Q5ZDE5________________SFSSLVSAIC-SCASDKLKKDSTVASSSWIAAGLSSGYCRLLDERSGNIVAxxRAHDGHITKLAA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain