SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene48388

Length: 218 nt

UniGene Fasta

>uagpf_v2_unigene48388
CGTCGTGACCTTGGCTGTCACTCAATCAGTAATTCTCTGGCAATAGCAAAGGCGGCGCAGGAGTCAAGAAGGCTCGATCCATCCCCCGAGCTACGCCTCCCGTCCGATTCCATCAAGGACGATTTTCCTTCATGGCTATCTGCAGGAGATCGGAGGATCCTACGTTCCTTTCCAAACGACGTCGTTGCTGACGTGATCGTGGCTCAGGATGGCTCTGG

Ace file of the UniGene uagpf_v2_unigene48388

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13164	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Pectinesterase n=1 Tax=Picea sitchensis RepID=A9NVV0_PICSI	-	-	82%
FL-Next	sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	pectin methylesterase	-	-	66%

Source	ECs	Term	Type	e value	Identity
Blast2go	Pectinesterase.	EC:3.1.1.11	-	0.0	66%

Source	KEGGs	Term	Identity
Blast2go	Pentose and glucuronate interconversions	00040	66%
Blast2go	Starch and sucrose metabolism	00500	66%
Blast2go	Metabolic pathways	01100	66%

Source	GOs	Term	Type	Identity
Blast2go	cell wall modification	GO:0042545	Biological Process	66%
Blast2go	negative regulation of catalytic activity	GO:0043086	Biological Process	66%
Blast2go	pectinesterase activity	GO:0030599	Molecular Function	66%
Blast2go	aspartyl esterase activity	GO:0045330	Molecular Function	66%
Blast2go	enzyme inhibitor activity	GO:0004857	Molecular Function	66%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	66%
Blast2go	cell wall	GO:0005618	Cellular Component	66%

Source	InterPros	Term	Type	Identity
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	Pectinesterase, active site	IPR018040	-	-
Sma3	Pectinesterase, catalytic	IPR000070	-	-
Sma3	Pectinesterase inhibitor	IPR006501	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVV0

Fln msg: Distance to subject end: 304 aas, your sequence is shorter than subject: 72 - 557

Fln protein: RRDLGCHSISNSLAIAKAAQESRRLDPSPELRLPSDSIKDDFPSWLSAGDRRILRSFPNDVVADVIVAQDGS

Protein Length: 73

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCAGTAATTCTCTGGCAATAGCAAAGGCGGCGCAGGAGTCAAGAAGGCTCGATCCATCCCCCGAGCTACGCCTCCCGTCCGATTCCATCAAGGACGATTTTCCTTCATGGCTATCTGCAGGAGATCGGAGGATCCTACGTTCCTTTCCAAACGACGTCGTTGCTGACGTGATCGTGGCTCAGGATGGCTCTGG

Fln Alignment:

uagpf_mira_rep_c50147___ISNSLAIAKAAQESRRLDPSPELRLPSDSIKDDFPSWLSAGDRRILRSFPNDVVADVIVAQDGS
A9NVV0________________ISNSLAIAKAAYESRPY-PSPALRLPSDSIKDDFPSWLSPGDRRLLRTSANDVVPNVIVAQDGS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain