SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene48384

Length: 245 nt

UniGene Fasta

>uagpf_v2_unigene48384
CGTCGTGACCTTGGCTGTCACTCATCTTGTCCAATACTGACGCAAGCACAAAATTGCCAAGGTAATGGAAGGCCAGATAAGGATTATGAAAATTGGAGGTGGCAACCTATGAATTGTGATCTGCCAAGATTTGATGCACACAAGTTTCTGGAACTAATGCATGGAAAAACCCTTGCTTTTGTGGGTGATTCGGTTGCCAGAAATCAGATGGAGTCAATGATGTGCATACTGTGGCAGGCTGAGAC

Ace file of the UniGene uagpf_v2_unigene48384

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene53548	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein trichome birefringence-like 18 n=2 Tax=Arabidopsis RepID=Q8VYS5_ARATH	-	-	9.0e-39	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Blast2go	protein trichome birefringence-like 18	-	-	0.0	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	leaf senescence	GO:0010150	Biological Process	0.0	82%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Channel forming colicin, C-terminal cytotoxic	IPR000293	-	-
Sma3	Bromo adjacent homology (BAH) domain	IPR001025	-	-
Sma3	Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type	IPR003617	-	-
Sma3		IPR004253	-	-
Sma3		IPR010990	-	-
Sma3		IPR014754	-	-
Sma3	Transcription factor IIS, N-terminal	IPR017923	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P207

Fln msg: Distance to subject end: 20 aas, your sequence is shorter than subject: 81 - 216

Fln protein: RRDLGCHSSCPILTQAQNCQGNGRPDKDYENWRWQPMNCDLPRFDAHKFLELMHGKTLAFVGDSVARNQMESMMCILWQAE

Protein Length: 82

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTTGTCCAATACTGACGCAAGCACAAAATTGCCAAGGTAATGGAAGGCCAGATAAGGATTATGAAAATTGGAGGTGGCAACCTATGAATTGTGATCTGCCAAGATTTGATGCACACAAGTTTCTGGAACTAATGCATGGAAAAACCCTTGCTTTTGTGGGTGATTCGGTTGCCAGAAATCAGATGGAGTCAATGATGTGCATACTGTGGCAGGCTGAGAC

Fln Alignment:

uagpf_mira_rep_c50142___SCPILTQAQNCQGNGRPDKDYENWRWQPMNCDLPRFDAHKFLELMHGKTLAFVGDSVARNQMESMMCIL
A9P207________________TCPYLNGGATCQMNGRPDSDYEKWRWKPRDCNIPRFNALDLLQRLKGKTIMFVGDSLSNNQWQSMLCLL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain