SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene48362

Length: 320 nt

UniGene Fasta

>uagpf_v2_unigene48362
CGTCGTGACCTTGGCTGTCACTCAAAATGTCAAGCACGGCAACCTGATTTGTCCCGTTTGTCGAGCAAAATGGAAGGAAGTACCGTCTCAAGCGTCGGTGAGTGCAGTCCAGAAGGATGAAAAAGCCGAAAGAGGCTCGGCATTGACCCCGAGAAGCAGCAGGAGAAACGCAACTTCTTCTTCTGAAGCCTCGGAACAAGCTGAATACAGGCGACCAGAAAGAAATTCTGAAGAATCAATTACTCCAAGAGGAACTCGTCAAATTCCTTCTTCTGAGCCCCTTTACGACGATGACGAGCCGCTCGACACGAATCTCAGGG

Ace file of the UniGene uagpf_v2_unigene48362

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene484	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9R6Q1_RICCO	-	-	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	41%
Blast2go	protein binding	-	-	57%

Source	InterPros	Term	Type	Identity
Sma3	Ornithine/DAP/Arg decarboxylase	IPR000183	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	von Willebrand factor, type A	IPR002035	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PS55

Fln msg: Distance to subject end: 567 aas, your sequence is shorter than subject: 106 - 829

Fln protein: VVTLAVTQNVKHGNLICPVCRAKWKEVPSQASVSAVQKDEKAERGSALTPRSSRRNATSSSEASEQAEYRRPERNSEESITPRGTRQIPSSEPLYDDDEPLDTNLR

Protein Length: 107

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAATGTCAAGCACGGCAACCTGATTTGTCCCGTTTGTCGAGCAAAATGGAAGGAAGTACCGTCTCAAGCGTCGGTGAGTGCAGTCCAGAAGGATGAAAAAGCCGAAAGAGGCTCGGCATTGACCCCGAGAAGCAGCAGGAGAAACGCAACTTCTTCTTCTGAAGCCTCGGAACAAGCTGAATACAGGCGACCAGAAAGAAATTCTGAAGAATCAATTACTCCAAGAGGAACTCGTCAAATTCCTTCTTCTGAGCCCCTTTACGACGATGACGAGCCGCTCGACACGAATCTCAGGG

Fln Alignment:

uagpf_mira_rep_c50112___VTQNVKHGNLICPVCRAKWKEVPSQASVSAVQKDEKAERGSALTPRSSRRNXXXXXXXXXXXXYRRPERNSEES---ITP------------RGTRQIPSSEP-LYDDDEPLDTNLR
C0PS55________________IASNVRHGNLICPVCRAKWKEVPWQ--VPVVEAENTDIGTTATTPTVRNGNLQIRRRPNNVRDDEAALRTAEEEQRRLDPVLRILDDSIASFRGHRQSCSQEPTVYDDDEPLDSNLR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain