SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene48288

Length: 219 nt

UniGene Fasta

>uagpf_v2_unigene48288
CGTCGTGACCTTGGCTGTCACTCAATGTTCAATCCTTACTTTGGTGCAGCCTTTCTTACAGACACAGGAAGGGAATCTGCCTTTGCTTATAACATCCAACGATATGCCGATGTGTATACAAGCAGACTAGAAAATTTTTTGAATTACTCGAGTGAAGCATGGCTGGATCCACCCTATGATGTCAAGATCATGCCCCATCATGTGAAGATACCATCAAGT

Ace file of the UniGene uagpf_v2_unigene48288

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene58529	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase [Arabidopsis thaliana] gb\|AAP21189.1\| At2g23890 [Arabidopsis thaliana] dbj\|BAE99881.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEC07499.1\| HAD-superfamily hydrolase, subfamily IG, 5'-nucleoti	-	-	2.0e-21	68%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	75%
Blast2go	protein	-	-	1.61149e-43	84%

Source	InterPros	Term	Type	Identity
Sma3	HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase	IPR008380	-	-
Sma3	Purine 5'-nucleotidase	IPR016695	-	-
Sma3	Peptidase S26A, signal peptidase I, conserved site	IPR019758	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: F6HYN5

Fln msg: STOP codon was not found. Distance to subject end: 5 aas, your sequence is shorter than subject: 73 - 153

Fln protein: RRDLGCHSMFNPYFGAAFLTDTGRESAFAYNIQRYADVYTSRLENFLNYSSEAWLDPPYDVKIMPHHVKIPSS

Protein Length: 74

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGTTCAATCCTTACTTTGGTGCAGCCTTTCTTACAGACACAGGAAGGGAATCTGCCTTTGCTTATAACATCCAACGATATGCCGATGTGTATACAAGCAGACTAGAAAATTTTTTGAATTACTCGAGTGAAGCATGGCTGGATCCACCCTATGATGTCAAGATCATGCCCCATCATGTGAAGATACCATCAAGT

Fln Alignment:

uagpf_mira_rep_c50005___MFNPYFGAAFLTDTGRESAFAYNIQRYADVYTSRLENFLNYSSEAWLDPPYDVKIMPHHVKIPSS
F6HYN5________________MFNRSFGATFLTDTGQESAFAYNIHQYADVYTSKPENFLFYPSEAWFHVPFDIKIMPHHVKVPSS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain