SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene48246

Length: 204 nt

UniGene Fasta

>uagpf_v2_unigene48246
CGTCGTGACCTTGGCTGTCACTCAATTTCTGCACGTAGAAGCCGTAGCACAACTGTGGCAATGAAAATGAGATTGGGGTCTTTGGGGTCTCTCAGTTCCAGATGTTTTCATAATGTTGATCTTCAAAGAGGCCGCCATGATCATGATTATCTCCCGATTGATAAGAGACTCGGGGCTCTCCAAAAGCTTGTTCCCGGTGGCACC

Ace file of the UniGene uagpf_v2_unigene48246

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4184	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	phy rapidly regulated 2 protein [Arabidopsis thaliana] emb\|CAB88302.1\| putative protein [Arabidopsis thaliana] gb\|AAR92241.1\| At3g58850 [Arabidopsis thaliana] gb\|AAS76234.1\| At3g58850 [Arabidopsis thaliana] dbj\|BAF01099.1\| hypothetical protein [Arabidopsi	-	-	2.0e-07	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Blast2go	phy rapidly regulated 2 protein	-	-	0.0	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	S-(hydroxymethyl)glutathione dehydrogenase.	EC:1.1.1.284	-	0.0	72%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Methane metabolism	00680		0.0	72%

Source	GOs	Term	Type	Identity
Blast2go	circadian rhythm	GO:0007623	Biological Process	72%
Blast2go	shade avoidance	GO:0009641	Biological Process	72%
Blast2go	formaldehyde metabolic process	GO:0046292	Biological Process	72%
Blast2go	heat acclimation	GO:0010286	Biological Process	72%
Blast2go	cell death	GO:0008219	Biological Process	72%
Blast2go	seed development	GO:0048316	Biological Process	72%
Blast2go	S-(hydroxymethyl)glutathione dehydrogenase activity	GO:0051903	Molecular Function	72%
Blast2go	S-nitrosoglutathione reductase activity	GO:0080007	Molecular Function	72%
Blast2go	peroxisome	GO:0005777	Cellular Component	72%
Blast2go	nucleus	GO:0005634	Cellular Component	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A9V6

Fln msg: Distance to subject end: 46 aas, your sequence is shorter than subject: 68 - 179

Fln protein: RRDLGCHSISARRSRSTTVAMKMRLGSLGSLSSRCFHNVDLQRGRHDHDYLPIDKRLGALQKLVPGGT

Protein Length: 69

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTCTGCACGTAGAAGCCGTAGCACAACTGTGGCAATGAAAATGAGATTGGGGTCTTTGGGGTCTCTCAGTTCCAGATGTTTTCATAATGTTGATCTTCAAAGAGGCCGCCATGATCATGATTATCTCCCGATTGATAAGAGACTCGGGGCTCTCCAAAAGCTTGTTCCCGGTGGCACC

Fln Alignment:

uagpf_mira_rep_c49949___SARRSRSTTVAMKMRXXXXXXXXXRCFHNVDLQRGRHDHDYLPIDKRLGALQKLVPGG
D5A9V6________________SLRQRHSVTLARRMRLDSLSS---RCCSNVDIKAGSHDHG--SIGGRLGTLQRLVPGG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain