SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene48239

Length: 338 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene48239
GCACGGTACGAGGAACATACCGGAGATTATGAACCTGATAGAGGCATCCCGGGGGATTCGAAAGCCTGCTATGCGCCTCTACGTCATGCACTTAGTGGAGCTGTCGGAGAGGTCTTCTGCGATCATGATGGTTCACAGGGCCNGGAAAAATGGGCTCCCTTCTGGAACCGCAACCGTTCCCAGCAGGACCAGATAGTGGTTGCGTTCGAGGCGTATGAGCAGCTGAGCAAGGTAGCGGTGAGGCCCATGACCGCCATCTCTGCCATCCAGGACATGCACGAGGACATCTGCAACATTGCGGACCAGAAACGGATTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene48239 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene67078	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Cation/H(+) antiporter 19 n=2 Tax=Arabidopsis RepID=CHX19_ARATH	-	-	73%
FL-Next	sp=Cation/H(+) antiporter 19; Arabidopsis thaliana (Mouse-ear cress).	-	-	64%
Blast2go	cation proton exchanger	-	-	78%

Source	InterPros	Term	Type	Identity
Sma3	Casein, alpha/beta	IPR001588	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	UspA	IPR006016	-	-
Sma3	Cation/H+ exchanger	IPR006153	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LUN4

Fln msg: Overlapping hits, possible frame ERROR between 160 and 157, Unexpected STOP codon at 3' end. Distance to subject end: 228 aas, your sequence is shorter than subject: 107 - 800

Fln protein: HGTRNIPEIMNLIEASRGIRKPAMRLYVMHLVELSERSSAIMMVHRAWKNGxxxWNRNRSQQDQIVVAFEAYEQLSKVAVRPMTAISAIQDMHEDICNIADQKRIE*

Protein Length: 108

Fln nts: GCACGGTACGAGGAACATACCGGAGATTATGAACCTGATAGAGGCATCCCGGGGGATTCGAAAGCCTGCTATGCGCCTCTACGTCATGCACTTAGTGGAGCTGTCGGAGAGGTCTTCTGCGATCATGATGGTTCACAGGGCCtGGAAAAATGGGxxxxxxxxxTGGAACCGCAACCGTTCCCAGCAGGACCAGATAGTGGTTGCGTTCGAGGCGTATGAGCAGCTGAGCAAGGTAGCGGTGAGGCCCATGACCGCCATCTCTGCCATCCAGGACATGCACGAGGACATCTGCAACATTGCGGACCAGAAACGGATTGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

uagpf_mira_rep_c49942___HGTRNIPEIMNLIEASRGI-RKPAMRLYVMHLVELSERSSAIMMVHRAWKNGLxFWNRNRSQQDQIVVAFEAYEQLSKVAVRPMTAISAIQDMHEDICNIADQKRI
Q9LUN4________________HSTRNIPTLINLIESSRGTGKKGRLCVYAMHLMELSERSSAIAMVHKARNNGLxIWNKIERSTDQMVIAFEAYQHLRAVAVRPMTAISGLSSIHEDICTSAHQKRV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain