SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene47898

Length: 284 nt

UniGene Fasta

>uagpf_v2_unigene47898
CGTCGTGACCTTGGTTGTGACCTTGTCTGTCACTGGTGTTTGGTCCAACGAACAGATATTTTCCTCTGGAGCTAAACAAGAAGAACCTACAGTATTTTATCCAAAAGTTGGGGAGGAGCATAGGAAAAAACGATATGAATCGTGGTGTAAAGCTGTAGAAAGGACATTTGACCTTGCAAATCTCTCTTCCTGATGTATGCACTATTCATCTTTGCAGTGTTGTACTGTGACATACTGCACCTATTATTCCTCATCAAATATTTAGCATAAATGCTACATTGTTT

Ace file of the UniGene uagpf_v2_unigene47898

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18837	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glycerol kinase n=1 Tax=Pandanus amaryllifolius RepID=Q6RJ33_9LILI	-	-	3.0e-34	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	glycerol kinase	-	-	0.0	81%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:2.7.1.3-	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	response to molecule of bacterial origin	GO:0002237	Biological Process	81%
Blast2go	glycerol catabolic process	GO:0019563	Biological Process	81%
Blast2go	response to microbial phytotoxin	GO:0010188	Biological Process	81%
Blast2go	glycerol kinase activity	GO:0004370	Molecular Function	81%
Blast2go	response to karrikin	GO:0080167	Biological Process	81%

Source	InterPros	Term	Type	Identity
Sma3	Carbohydrate kinase, FGGY	IPR000577	-	-
Sma3	Glycerol kinase	IPR005999	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-
Sma3	Carbohydrate kinase, FGGY, N-terminal	IPR018484	-	-
Sma3	Carbohydrate kinase, FGGY, C-terminal	IPR018485	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NV89

Fln msg: your sequence is shorter than subject: 64 - 534

Fln protein: VVTLVVTLSVTGVWSNEQIFSSGAKQEEPTVFYPKVGEEHRKKRYESWCKAVERTFDLANLSS*

Protein Length: 65

Fln nts: CGTCGTGACCTTGGTTGTGACCTTGTCTGTCACTGGTGTTTGGTCCAACGAACAGATATTTTCCTCTGGAGCTAAACAAGAAGAACCTACAGTATTTTATCCAAAAGTTGGGGAGGAGCATAGGAAAAAACGATATGAATCGTGGTGTAAAGCTGTAGAAAGGACATTTGACCTTGCAAATCTCTCTTCCTGA___TGTATGCACTATTCATCTTTGCAGTGTTGTACTGTGACATACTGCACCTATTATTCCTCATCAAATATTTAGCATAAATGCTACATTGTTT

Fln Alignment:

uagpf_mira_rep_c49438___WSNEQIFSSGAKQEEPTVFYPKVGEEHRKKRYESWCKAVERTFDLANLSS
A9NV89________________WTEEQIFSSGAKKEEPTVFYPKVGDEHRKKRYESWCKAVERTFDLANLSS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain