SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene47884

Length: 278 nt

UniGene Fasta

>uagpf_v2_unigene47884
CGTCGTGACCTTGGCTGTCACTCAGGTATACAGGCTGCTCCTCCTGGAAAAGGGGAAAACAGGAAAAAAATGCATGCTCGTCGTACGTTGGCTGTCACTCAAAAGGAAAAAGGATCGTTCTTGGCGGGTGGGTAATGATGAGAGTGATGGCATGCCTGCTGTAAAAGCAGTTGAAAAGCCAGTTAGTTATGGTGCATCTAGATTACATTACTAATGCTGCGAGTGTAGTTAGTGATTGCAGCAATGACATGGCTGCTGCAGAAGTATTAAGTGCTGAT

Ace file of the UniGene uagpf_v2_unigene47884

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene99	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to GTP-binding family protein n=1 Tax=Vitis vinifera RepID=UPI0001985842	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	69%
Blast2go	gtp-binding protein	-	-	67%

Source	InterPros	Term	Type	Identity
Sma3		IPR002917	-	-
Sma3		IPR005289	-	-
Sma3	GTP binding domain	IPR006073	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D8SR13

Fln msg: your sequence is shorter than subject: 71 - 487

Fln protein: VVTLAVTQVYRLLLLEKGKTGKKCMLVVRWLSLKRKKDRSWRVGNDESDGMPAVKAVEKPVSYGASRLHY*

Protein Length: 72

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTATACAGGCTGCTCCTCCTGGAAAAGGGGAAAACAGGAAAAAAATGCATGCTCGTCGTACGTTGGCTGTCACTCAAAAGGAAAAAGGATCGTTCTTGGCGGGTGGGTAATGATGAGAGTGATGGCATGCCTGCTGTAAAAGCAGTTGAAAAGCCAGTTAGTTATGGTGCATCTAGATTACATTACTAA___TGCTGCGAGTGTAGTTAGTGATTGCAGCAATGACATGGCTGCTGCAGAAGTATTAAGTGCTGAT

Fln Alignment:

uagpf_mira_rep_c49419___RKKDRSWRVGNDESDGMPAVKAVEKPVSYGASR
D8SR13________________RKKDRSWRVKDDESDGMARVKGISVSVSYGAAR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain