SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene47756

Length: 235 nt

UniGene Fasta

>uagpf_v2_unigene47756
CGTCGTGACCTTGGCTGTCACTCAGTTTTCTAGGCGTGAAGAGGGTGTTCAACACATCTTAGTCACCGGTGGGGCTGGATACATTGGATCACATGCTTCTCTACGACTGTTAGAAGATGGTCACATGGTGACAATAGTGGACAATCTTTCTCGGGGAAATTTAGGAGCTGTTCATGTATTACAGCAGTTATTTCCACATCCTAATCAACTGCAATTCATTTATGCCGACTTGGGT

Ace file of the UniGene uagpf_v2_unigene47756

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5215	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	UDP-glucose 4-epimerase-like protein [Arabidopsis thaliana] emb\|CAB79046.1\| UDP-glucose 4-epimerase-like protein [Arabidopsis thaliana] gb\|AAM91643.1\| putative UDP-glucose 4-epimerase protein [Arabidopsis thaliana]	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	48%
Blast2go	udp-arabinose 4-epimerase 1	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	UDP-arabinose 4-epimerase.	EC:5.1.3.5	-	0.0	82%

Source	KEGGs	Term	Type	Identity
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		82%
Blast2go	Metabolic pathways	01100		82%
Blast2go	UDP-glucose 4-epimerase.	EC:5.1.3.2	-	82%

Source	KEGGs	Term	Identity
Blast2go	Galactose metabolism	00052	82%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	82%
Blast2go	Metabolic pathways	01100	82%

Source	GOs	Term	Type	Identity
Blast2go	nucleotide-sugar metabolic process	GO:0009225	Biological Process	82%
Blast2go	galactose metabolic process	GO:0006012	Biological Process	82%
Blast2go	UDP-arabinose 4-epimerase activity	GO:0050373	Molecular Function	82%
Blast2go	coenzyme binding	GO:0050662	Molecular Function	82%
Blast2go	UDP-glucose 4-epimerase activity	GO:0003978	Molecular Function	82%

Source	InterPros	Term	Type	Identity
Sma3	Sulfatase	IPR000917	-	-
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	-
Sma3	UDP-glucose 4-epimerase	IPR005886	-	-
Sma3	Nucleotide sugar epimerase	IPR008089	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKM2

Fln msg: Distance to subject end: 280 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 78 - 356

Fln protein: VVTLAVTQFSRREEGVQHILVTGGAGYIGSHASLRLLEDGHMVTIVDNLSRGNLGAVHVLQQLFPHPNQLQFIYADLG

Protein Length: 79

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTTCTAGGCGTGAAGAGGGTGTTCAACACATCTTAGTCACCGGTGGGGCTGGATACATTGGATCACATGCTTCTCTACGACTGTTAGAAGATGGTCACATGGTGACAATAGTGGACAATCTTTCTCGGGGAAATTTAGGAGCTGTTCATGTATTACAGCAGTTATTTCCACATCCTAATCAACTGCAATTCATTTATGCCGACTTGGGT

Fln Alignment:

uagpf_mira_rep_c49218___EEGVQH-ILVTGGAGYIGSHASLRLLEDGHMVTIVDNLSRGNLGAVHVLQQLFPH--PNQLQFIYADL
B8LKM2________________EEGFNKCILVTGGAGFIGSHTVLQLLEDGYEVYIIDNLDNSVEEAVNRVRDLVDQRFRQNLHFFLGDL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain