SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene47729

Length: 402 nt

UniGene Fasta

>uagpf_v2_unigene47729
CGTCGTGACCTTGGCTGTCACTCAGGTGATCACCATGGATGGTACTGGTAGGAACTTCGACGATGGCGCGGACGGGATTCGAAACCGCGACGCTCGGCCTCGAACGTACCGAGGCGTTCGCCGCCGGAGCTGGGGGAAGTGGGTGTCCGAGATTCGCGAGCCTGGGAAGAGAAAGCGCATATGGTTGGGATCCTTCGAAACGGCAGAGATGGCGGCTCGAGCTTACGACGTGGCTGCGCTCAGCCTGAAGGGAAGATCCGCTTTGCCCAATTTCCCGGATTCCGTCCACACGCTGCCGCGCCCCTCTTCTCTGAATCCCAGAGATATCCAGCTGGCGCTGCCCAGGCAGCCGCCGAATTAACGCAGCCGATGGTCTCTACCGATATTTCATCCCGGCTTCGC

Ace file of the UniGene uagpf_v2_unigene47729

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11286	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AP2 domain containing protein	-	-	3.0e-13	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Blast2go	dre binding factor 2	-	-	2.27499e-33	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	2.27499e-33	80%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	2.27499e-33	80%
Blast2go	DNA binding	GO:0003677	Molecular Function	2.27499e-33	80%
Blast2go	nucleus	GO:0005634	Cellular Component	2.27499e-33	80%
Blast2go	plastid	GO:0009536	Cellular Component	2.27499e-33	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	AP2/ERF domain	IPR001471	-	0.0	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LM17

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 104 aas, atg_distance in limit (1-15): atg_distance = 10, your sequence is shorter than subject: 109 - 247

Fln protein: MDGTGRNFDDGADGIRNRDARPRTYRGVRRRSWGKWVSEIREPGKRKRIWLGSFETAEMAARAYDVAALSLKGRSALPNFPDSVHTLPRPSSLNPRDIQLALPRQPPN*

Protein Length: 110

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTGATCACC_-_ATGGATGGTACTGGTAGGAACTTCGACGATGGCGCGGACGGGATTCGAAACCGCGACGCTCGGCCTCGAACGTACCGAGGCGTTCGCCGCCGGAGCTGGGGGAAGTGGGTGTCCGAGATTCGCGAGCCTGGGAAGAGAAAGCGCATATGGTTGGGATCCTTCGAAACGGCAGAGATGGCGGCTCGAGCTTACGACGTGGCTGCGCTCAGCCTGAAGGGAAGATCCGCTTTGCCCAATTTCCCGGATTCCGTCCACACGCTGCCGCGCCCCTCTTCTCTGAATCCCAGAGATATCCAGCTGGCGCTGCCCAGGCAGCCGCCGAATTAACGCAGCCGATGGTCTCTACCGATATTTCATCCCGGCTTCGC

Fln Alignment:

uagpf_mira_rep_c49183___DDGADGIRNRDARPRTYRGVRRRSWGKWVSEIREPGKRKRIWLGSFETAEMAARAYDVAALSLKGRSALPNFPDSVHTLPRPSSLNPRDIQLA
B8LM17________________EDKQRGLRVKGNPHPVYRGVRMRTWGKWVSEIREPKKKSRIWLGTFPTPEMAARAHDVAALTLKGESAILNFPHLASSLPRPATLSTRDIQEA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain