SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene47609

Length: 220 nt

UniGene Fasta

>uagpf_v2_unigene47609
CGTCGTGACCTTGGCTGTCACTCAGCTTTTCCAACCTCCCAAACCCTCCTCATTGGCGGTCCAGGAAAATGGGAAGCACTGACGCCAAGAAGCCTCTCAAGATCAAGATCATTGCAGGAGCTGATGACTTCGGCTGCGCGCTCAAAGATTTCCTTATCGAATACCTCCGATCAAAGGGTATCGAGGTCCAGGATCTCGGCACCGATAAGTACTACAATGG

Ace file of the UniGene uagpf_v2_unigene47609

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15839	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	DNA-damage-repair/toleration protein DRT102, putative n=1 Tax=Ricinus communis RepID=B9RES2_RICCO	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	dna-damage-repair toleration protein drt102	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	photoreactive repair	GO:0000719	Biological Process	74%
Blast2go	response to cold	GO:0009409	Biological Process	74%
Blast2go	response to UV	GO:0009411	Biological Process	74%
Blast2go	cytoplasm	GO:0005737	Cellular Component	74%
Blast2go	nucleus	GO:0005634	Cellular Component	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	DNA-damage-repair/toleration protein, DRT102	IPR012100	-	0.0	-
Sma3	Ribose/galactose isomerase	IPR003500	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NK44

Fln msg: Distance to subject end: 259 aas, your sequence is shorter than subject: 50 - 308

Fln protein: MGSTDAKKPLKIKIIAGADDFGCALKDFLIEYLRSKGIEVQDLGTDKYYN

Protein Length: 51

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCTTTTCCAACCTCCCAAACCCTCCTCATTGGCGGTCCAGGAAA_-_ATGGGAAGCACTGACGCCAAGAAGCCTCTCAAGATCAAGATCATTGCAGGAGCTGATGACTTCGGCTGCGCGCTCAAAGATTTCCTTATCGAATACCTCCGATCAAAGGGTATCGAGGTCCAGGATCTCGGCACCGATAAGTACTACAATGG

Fln Alignment:

uagpf_mira_rep_c49001___MGSTDAKKPLKIKIIAGADDFGCALKDFLIEYLRSKGIEVQDLGTDKYYN
A9NK44________________MGSTDAKKPLKI--IAGADDFGCALKDSLIEHLRSKGIEVQDLGTDKYYS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain