SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene47564

Length: 405 nt

UniGene Fasta

>uagpf_v2_unigene47564
CGTCGTGACCTTGGCTGTCACTCATTTTGCAATATGTGTGCAGATGAGCTTGGCATCATATCAATTCAGAGTTTGGGGTCCTAGGGGCTGGATTGTGCCTACTGGAGATGAAACCGAAACCTATAATCAGTGGGCTCAACGTAACAGGTTTCATGTTGATGATGATCTCTATTTCAAGTACAAGAAGCAGGAGGATTCAGTGCTTCTTGTGACACAGGCAGCTTATGAAACCTGCAATACTTCGAAACCTATAGCATATTATGATGACGGCAATACAGTCATCAAGCTTCGCCATTCTGGTCCTTTTTACTTTATTAGCGGTATTCCAGAGAACTGCAATAAGGGGCAGAAACTTATTGTTGTTGTCATGGCATCTTCTGGCCATAGTGGCCCTGGTACCTATTC

Ace file of the UniGene uagpf_v2_unigene47564

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene37909	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cu_bind_like domain containing protein	-	-	1.0e-24	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Blast2go	early nodulin-like protein 2	-	-	1.25077e-38	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	1.25077e-38	69%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Plastocyanin-like	IPR003245	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NSL6

Fln msg: Distance to subject end: 64 aas, atg_distance in limit (1-15): atg_distance = 13, your sequence is shorter than subject: 120 - 210

Fln protein: MSLASYQFRVWGPRGWIVPTGDETETYNQWAQRNRFHVDDDLYFKYKKQEDSVLLVTQAAYETCNTSKPIAYYDDGNTVIKLRHSGPFYFISGIPENCNKGQKLIVVVMASSGHSGPGTY

Protein Length: 121

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTGCAATATGTGTGCAG_-_ATGAGCTTGGCATCATATCAATTCAGAGTTTGGGGTCCTAGGGGCTGGATTGTGCCTACTGGAGATGAAACCGAAACCTATAATCAGTGGGCTCAACGTAACAGGTTTCATGTTGATGATGATCTCTATTTCAAGTACAAGAAGCAGGAGGATTCAGTGCTTCTTGTGACACAGGCAGCTTATGAAACCTGCAATACTTCGAAACCTATAGCATATTATGATGACGGCAATACAGTCATCAAGCTTCGCCATTCTGGTCCTTTTTACTTTATTAGCGGTATTCCAGAGAACTGCAATAAGGGGCAGAAACTTATTGTTGTTGTCATGGCATCTTCTGGCCATAGTGGCCCTGGTACCTATTC

Fln Alignment:

uagpf_mira_rep_c48928___FAICVQMSLASYQFRVWGPRGWIVPTGDETETYNQWAQRNRFHVDDDLYFKYKKQEDSVLLVTQAAYETCNTSKPIAYYDDGNTVIKLRHSGPFYFISGIPENCNKGQKLIVVVMASSGHSGPG
A9NSL6________________FLLGLQMAAGS-DFIVGGNNGWVVPTGSERESFNQWAERLRFHVGDTLLFKYSANQDSVLLVSRDAFQSCNTTSPAASYNDGNTAFKFPRPGPYYFISGAQGHCEKGQKLVVVVMTHRGRHSNG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain