SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene47350

Length: 142 nt

UniGene Fasta

>uagpf_v2_unigene47350
CGTCGTGACCTTGGCTGTCACTCATTGAAAACTCTCACTGGCAAGACAATCACTTTGGAAGTTGAGAGCTCTGACACCATCGACAATGTTAAGGCCAAGATCCAGGACAAGGAAGGAATACCCCCGGACCAGCAAAGGCTAA

Ace file of the UniGene uagpf_v2_unigene47350

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene60311	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	Polyubiquitin 14 n=9 Tax=core eudicotyledons RepID=UBQ14_ARATH	-	-	100%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	ubiquitin	-	-	99%

Source	GOs	Term	Type	Identity
Blast2go	response to UV-B	GO:0010224	Biological Process	99%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	99%
Blast2go	aging	GO:0007568	Biological Process	99%
Blast2go	cellular protein metabolic process	GO:0044267	Biological Process	99%
Blast2go	vacuole	GO:0005773	Cellular Component	99%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin	IPR000626	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LP57

Fln msg: Distance to subject end: 85 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 47 - 128

Fln protein: RRDLGCHSLKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL

Protein Length: 48

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGAAAACTCTCACTGGCAAGACAATCACTTTGGAAGTTGAGAGCTCTGACACCATCGACAATGTTAAGGCCAAGATCCAGGACAAGGAAGGAATACCCCCGGACCAGCAAAGGCTAA

Fln Alignment:

uagpf_mira_rep_c48614___LKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL
B8LP57________________VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain