SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene47078

Length: 268 nt

UniGene Fasta

>uagpf_v2_unigene47078
CGTCGTGACCTTGGCTGTCACTCAGTTTTTGATTTGAGGGACAAGGAGCATTCTACTATTATTTATGAAAGCTCACAGCCAGAGACTCCATTGTTACGACTGGGTGGAACAAACGGGACCCAAGATATATGGCTACTATTCTTATGGATAGCTCTAAAGTCGTCGTGTTGGATATCAGATTTCCAACTATACCTGTAGCAGAACTTCAAAGGCATCAGGCAAGTGTTAATGCCATTGCATGGGCTCCTCACAGTCCTTGTCATATTTG

Ace file of the UniGene uagpf_v2_unigene47078

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9037	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	WD40 repeat protein [Ipomoea purpurea] dbj\|BAE94399.1\| WD40 repeat protein [Ipomoea nil]	-	-	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	protein	-	-	93%

Source	GOs	Term	Type	Identity
Blast2go	anthocyanin biosynthetic process	GO:0009718	Biological Process	93%
Blast2go	photoperiodism, flowering	GO:0048573	Biological Process	93%
Blast2go	entrainment of circadian clock by photoperiod	GO:0043153	Biological Process	93%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	93%
Blast2go	nucleus	GO:0005634	Cellular Component	93%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLH5

Fln msg: Overlapping hits, possible frame ERROR between 105 and 90, Distance to subject end: 64 aas, your sequence is shorter than subject: 89 - 339

Fln protein: RRDLGCHSVFDLRDKEHSTIIYESSQPETxxxxxxxNKRDPRYMATILMDSSKVVVLDIRFPTIPVAELQRHQASVNAIAWAPHSPCHI

Protein Length: 90

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTTTGATTTGAGGGACAAGGAGCATTCTACTATTATTTATGAAAGCTCACAGCCAGAGACTxxxxxxxxxxxxxxxxxxxxxAACAAACGGGACCCAAGATATATGGCTACTATTCTTATGGATAGCTCTAAAGTCGTCGTGTTGGATATCAGATTTCCAACTATACCTGTAGCAGAACTTCAAAGGCATCAGGCAAGTGTTAATGCCATTGCATGGGCTCCTCACAGTCCTTGTCATATTTG

Fln Alignment:

uagpf_mira_rep_c48235___GCHSVFDLRDKEHSTIIYESSQPETPxxxxxWNKRDPRYMATILMDSSKVVVLDIRFPTIPVAELQRHQASVNAIAWAPHSPCHI
B8LLH5________________GSVRVFDLRDKEHSTIIYESSQPETPxxxxxWNKQDPRFIATILMDSCKVVILDIRFPTLPVAELQRHQASVNTIAWAPHSPCHI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain