SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene47014

Length: 199 nt

UniGene Fasta

>uagpf_v2_unigene47014
CGTCGTGACCTTGGCTGTCACTCAATATTTGAGTGGATGGCATCATGGTGTAGGAAATGTATATTTTTAAAGCCTAAATTGGAGAGGCTTGCAGCGGAATTCTATCCGAGAGTTAGGTTCTACTGTGTAAATGTTAATGCAGTTCCACAATCACTTGTAGACCGTGCCGAAGTAGTTAAAATGCCAACAATTCAGCTAT

Ace file of the UniGene uagpf_v2_unigene47014

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5561	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Thioredoxin-like 8 n=3 Tax=Zea mays RepID=B6TCX1_MAIZE	-	-	8.99634e-43	53%
FL-Next	sp=Thioredoxin-like 3-2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	73%
Blast2go	protein	-	-	0.0	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	0.0	75%
Blast2go	chloroplast thylakoid	GO:0009534	Cellular Component	0.0	75%

Source	InterPros	Term	Type	Identity
Sma3		IPR012335	-	-
Sma3	Thioredoxin domain	IPR013766	-	-
Sma3		IPR015467	-	-
Sma3		IPR017936	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8VZT6

Fln msg: Distance to subject end: 33 aas, your sequence is shorter than subject: 66 - 192

Fln protein: RRDLGCHSIFEWMASWCRKCIFLKPKLERLAAEFYPRVRFYCVNVNAVPQSLVDRAEVVKMPTIQL

Protein Length: 67

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATATTTGAGTGGATGGCATCATGGTGTAGGAAATGTATATTTTTAAAGCCTAAATTGGAGAGGCTTGCAGCGGAATTCTATCCGAGAGTTAGGTTCTACTGTGTAAATGTTAATGCAGTTCCACAATCACTTGTAGACCGTGCCGAAGTAGTTAAAATGCCAACAATTCAGCTAT

Fln Alignment:

uagpf_mira_rep_c48146___LGCHSIFEWMASWCRKCIFLKPKLERLAAEFYPRVRFYCVNVNAVPQSLVDRAEVVKMPTIQL
Q8VZT6________________LGESVVIVWMAAWCRKCIYLKPKLEKLAAEFYPRLRFYHVDVNAVPYRLVSRAGVTKMPTIQL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain