SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene47011

Length: 237 nt

UniGene Fasta

>uagpf_v2_unigene47011
CGTCGTGACCTTGGCTGTCACTCAATATCCCATCGCGGCACAACTCTGAATTTAATACAACAAAAACCCATCTATATTCTACTCTTCAACTCAATTTAAGCTCCGACATCTCTGAATTCACGGTGTCTGATCAGCTTGGATATGGCCATGGCCGATATCTCGTTTACTGGGACATCTCAGCTTTTGCAGAGGAAGACGAACGTCTCTTTATATCGTCTGAACAGTTCTTTCTTGCCA

Ace file of the UniGene uagpf_v2_unigene47011

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3581	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Malate dehydrogenase [NADP], chloroplastic n=2 Tax=Flaveria RepID=MDHP_FLABI	-	-	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	malate dehydrogenase	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Malate dehydrogenase (NADP(+)).	EC:1.1.1.82	-	0.0	89%

Source	KEGGs	Term	Identity
Blast2go	Pyruvate metabolism	00620	89%
Blast2go	Carbon fixation in photosynthetic organisms	00710	89%
Blast2go	Metabolic pathways	01100	89%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	89%
Blast2go	malate metabolic process	GO:0006108	Biological Process	89%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	89%
Blast2go	binding	GO:0005488	Molecular Function	89%
Blast2go	malate dehydrogenase (NADP+) activity	GO:0046554	Molecular Function	89%
Blast2go	chloroplast	GO:0009507	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	Lactate/malate dehydrogenase, N-terminal	IPR001236	-	-
Sma3	Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal	IPR015955	-	-
Sma3	Malate dehydrogenase, active site	IPR001252	-	-
Sma3	Malate dehydrogenase, NADP-dependent, plants	IPR011273	-	-
Sma3	Malate dehydrogenase, type 2	IPR010945	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NX63

Fln msg: Distance to subject end: 415 aas, your sequence is shorter than subject: 32 - 447

Fln protein: MAMADISFTGTSQLLQRKTNVSLYRLNSSFLP

Protein Length: 33

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATATCCCATCGCGGCACAACTCTGAATTTAATACAACAAAAACCCATCTATATTCTACTCTTCAACTCAATTTAAGCTCCGACATCTCTGAATTCACGGTGTCTGATCAGCTTGGAT_-_ATGGCCATGGCCGATATCTCGTTTACTGGGACATCTCAGCTTTTGCAGAGGAAGACGAACGTCTCTTTATATCGTCTGAACAGTTCTTTCTTGCCA

Fln Alignment:

uagpf_mira_rep_c48140___MAMADISFTGTSQLLQRKTNVSLYRLNSSFLP
A9NX63________________MAMADISFSGTCQLFQRRTNVSLHNLNSSFLP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain