SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene46973

Length: 368 nt

UniGene Fasta

>uagpf_v2_unigene46973
CGTCGTGACCTTGGCTGTCACTCATTCCCATCCACCTTCACATTTGTTCTAAGGGCATTTTCAACTCTTGAAGGAATTGGCTATACACTCAATCCAGATTTCTCTTTTGCTAAAGTTGCTGCTCCTTATGCCCAGGAACTATTAGATATGCGGGATTCACAAAGAAATGGATCTTCAATAGTTGAGGAGATTCAGCGACAAGCAAATGATGCTCGAGAGGCGACAATTTCCATGCCATACAAGATACAACGTATAGATGAATTCATTCAACAACTTGATGCAGGAGATATTAAACTTCGAGTACGGGTGTTAGAGGCTGAAAGNGCAGCCAGAAGGGCATCCGTAATGCAGATGGCAACTATACATAC

Ace file of the UniGene uagpf_v2_unigene46973

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18107	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	protein kinase domain-containing protein [Arabidopsis thaliana] ref\|NP_850536.1\| protein kinase domain-containing protein [Arabidopsis thaliana] dbj\|BAH19998.1\| AT3G07700 [Arabidopsis thaliana] gb\|AEE74588.1\| protein kinase domain-containing protein [Arab	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	uncharacterized protein sll1770-like	-	-	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	ABC-1	IPR004147	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PR57

Fln msg: Distance to subject end: 53 aas, your sequence is shorter than subject: 122 - 369

Fln protein: RRDLGCHSFPSTFTFVLRAFSTLEGIGYTLNPDFSFAKVAAPYAQELLDMRDSQRNGSSIVEEIQRQANDAREATISMPYKIQRIDEFIQQLDAGDIKLRVRVLEAERAARRASVMQMATIH

Protein Length: 123

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCCCATCCACCTTCACATTTGTTCTAAGGGCATTTTCAACTCTTGAAGGAATTGGCTATACACTCAATCCAGATTTCTCTTTTGCTAAAGTTGCTGCTCCTTATGCCCAGGAACTATTAGATATGCGGGATTCACAAAGAAATGGATCTTCAATAGTTGAGGAGATTCAGCGACAAGCAAATGATGCTCGAGAGGCGACAATTTCCATGCCATACAAGATACAACGTATAGATGAATTCATTCAACAACTTGATGCAGGAGATATTAAACTTCGAGTACGGGTGTTAGAGGCTGAAAGaGCAGCCAGAAGGGCATCCGTAATGCAGATGGCAACTATACATAC

Fln Alignment:

uagpf_mira_rep_c48082___FPSTFTFVLRAFSTLEGIGYTLNPDFSFAKVAAPYAQELLDMRDSQRNGSSIVEEIQRQANDAREATISMPYKIQRIDEFIQQLDAGDIKXXXXXXXXXXXXXXXSVMQMATIH
C0PR57________________FPSTFTFVLRAFSTLEGIGYTLNPDFSFAKIAAPYAQELLDMRESKRNGTSIVQEIQRQANDAREATISMPYKIQRIDEFIQQLDAGDLKLRVRVLEAERAARRASVMQMATIH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain