SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene46945

Length: 365 nt

UniGene Fasta

>uagpf_v2_unigene46945
CGTCGTGACCTTGGCTGTCACTCAAACTATAGAAGTGCCAGAGATTTCTGCATCTAGTAAGGCATCATGTAATACTGGAAATTCAAAGACAGCTGAAGTGGATGGTACTGCAAAAATAATATCAAGCAAAATTGATGATGCTGTCAAGGTTTGTGTTGAAATTGGAGAATTACCTGCTGACGTTATCTTTCCCCGAGCAGCTGTGAAAATAGTGGCAGCTAATATGAAGAAAAAATTGAAGGGAGTTTGTAGAGACTTAGAATACACAAGCAGTGTTTCATTTCAAATTGCAGCTATTGTGAAGCGCAAGCTGGTGATAGGAAACACAAAGAATGCATGTGACATTTCTCCCATAGTAATAGCAG

Ace file of the UniGene uagpf_v2_unigene46945

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1262	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Arginyl-tRNA--protein transferase 1 n=1 Tax=Ricinus communis RepID=B9SLM9_RICCO	-	-	52%
FL-Next	sp=Arginyl-tRNA--protein transferase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	35%
Blast2go	arginyl-trna--protein transferase 1-like	-	-	66%

Source	ECs	Term	Type	e value	Identity
Blast2go	Arginyltransferase.	EC:2.3.2.8	-	0.0	66%

Source	GOs	Term	Type	Identity
Blast2go	leaf senescence	GO:0010150	Biological Process	66%
Blast2go	regulation of lipid catabolic process	GO:0050994	Biological Process	66%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	66%
Blast2go	protein arginylation	GO:0016598	Biological Process	66%
Blast2go	regulation of seed germination	GO:0010029	Biological Process	66%
Blast2go	xylem development	GO:0010089	Biological Process	66%
Blast2go		GO:0008415	Molecular Function	66%
Blast2go	binding	GO:0005488	Molecular Function	66%
Blast2go	arginyltransferase activity	GO:0004057	Molecular Function	66%

Source	InterPros	Term	Type	Identity
Sma3	Carbohydrate binding module family 20	IPR002044	-	-
Sma3	Arginine-tRNA-protein transferase, N-terminal	IPR007471	-	-
Sma3	Arginine-tRNA-protein transferase, C-terminal	IPR007472	-	-
Sma3	Immunoglobulin-like fold	IPR013783	-	-
Sma3	Arginine-tRNA-protein transferase 1, eukaryotic	IPR017137	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9ZT48

Fln msg: Distance to subject end: 395 aas, your sequence is shorter than subject: 121 - 632

Fln protein: VVTLAVTQTIEVPEISASSKASCNTGNSKTAEVDGTAKIISSKIDDAVKVCVEIGELPADVIFPRAAVKIVAANMKKKLKGVCRDLEYTSSVSFQIAAIVKRKLVIGNTKNACDISPIVIA

Protein Length: 122

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAACTATAGAAGTGCCAGAGATTTCTGCATCTAGTAAGGCATCATGTAATACTGGAAATTCAAAGACAGCTGAAGTGGATGGTACTGCAAAAATAATATCAAGCAAAATTGATGATGCTGTCAAGGTTTGTGTTGAAATTGGAGAATTACCTGCTGACGTTATCTTTCCCCGAGCAGCTGTGAAAATAGTGGCAGCTAATATGAAGAAAAAATTGAAGGGAGTTTGTAGAGACTTAGAATACACAAGCAGTGTTTCATTTCAAATTGCAGCTATTGTGAAGCGCAAGCTGGTGATAGGAAACACAAAGAATGCATGTGACATTTCTCCCATAGTAATAGCAG

Fln Alignment:

uagpf_mira_rep_c48040___NSKTAEVDGTAKIISSKIDDAVKVCVEIGELPADVIFPRAAVKIVAANMKKKLKGVCRDLEYTSSVSFQIAAIVKR
Q9ZT48________________SEENKKVEAVMDDLSKNIDQAVQLCIRSGEFPSNMQIPKASVKKVFCARRKKLAEGTEQILYTSNIAFPIAAAIKR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain